Browse Element(s) Details


OsAffx.7847.1.S1_at

Description tigr:9640.m03998
TID=OsAffx.7847.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4086011/11Leucine Rich Repeat family protein, expressed
LOC_Os03g433901/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40830Os.7623.1.S1_at10/1112+25237928..25243410Pyridoxal kinase, putative, expressed
LOC_Os12g40840Os.9919.1.S1_s_at11/1112+25248685..25250749expressed protein
LOC_Os12g40850OsAffx.20061.1.S1_at10/1112+25261123..25262707hypothetical protein
LOC_Os12g40850OsAffx.16028.1.S1_x_at1/1112+25261123..25262707hypothetical protein
LOC_Os12g40860OsAffx.7847.1.S1_at11/1112+25264464..25269051Leucine Rich Repeat family protein, expressed
LOC_Os12g40869NANA12+25269880..25270942NA
LOC_Os12g40880Os.5887.1.S1_a_at11/1112+25272204..25276175phosphoribulokinase/uridine kinase family protein, putative, expressed
LOC_Os12g40890Os.10109.1.S1_at11/1112+25277291..25282627Auxin-induced protein AUX28, putative, expressed
LOC_Os12g40900Os.7855.1.S1_at11/1112+25291953..25293509Auxin-induced protein 22D, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7847.1.S1_at--1004--7331Chr12:25267488..25267512 (25 bp)
GTGCAGGTGGCTACTTCACAGTTGC
LOC_Os12g40860
OsAffx.7847.1.S1_at--273--9572Chr12:25267517..25267541 (25 bp)
TCTTCAGCTCATGGACTGTGGCAAG
LOC_Os12g40860
OsAffx.7847.1.S1_at--954--5911Chr12:25267541..25267565 (25 bp)
GAGCTTATGTGCTAATTCGCAGCCT
LOC_Os12g40860
OsAffx.7847.1.S1_at--923--2331Chr12:25267637..25267661 (25 bp)
AAAGCAGCAGCCTAATTACCAAAAG
LOC_Os12g40860
OsAffx.7847.1.S1_at--414--4811Chr12:25267713..25267842 (25 bp)
GCTCTGGATGCCCTGTATGTAAATT
LOC_Os12g40860
OsAffx.7847.1.S1_at--614--6111Chr12:25267853..25267877 (25 bp)
GAGTGATCTCAATCTCAACTGTTGC
LOC_Os12g40860
OsAffx.7847.1.S1_at--674--3051Chr12:25267881..25267905 (25 bp)
AATCTTCATCCAGGTGCGATGTCTC
LOC_Os12g40860
OsAffx.7847.1.S1_at--452--2292Chr12:25267913..25268003 (25 bp)
AAATGCAGAACGGTTGCTTCTTCAG
LOC_Os12g40860
OsAffx.7847.1.S1_at--1011--7011Chr12:25268022..25268046 (25 bp)
GTACATGCCTCTGGGTGCCGTGACA
LOC_Os12g40860
OsAffx.7847.1.S1_at--673--1191Chr12:25268386..25268410 (25 bp)
AGTTTGCTTCAGCAGAGCCTCGGGT
LOC_Os12g40860
OsAffx.7847.1.S1_at--54--7911Chr12:25268408..25268432 (25 bp)
GGTTCCTTGCAAGCGGCTAGCGGAT
LOC_Os12g40860
Target Sequence 
GTGCAGGTGGCTACTTCACAGTTGCCACTTCTTCAGCTCATGGACTGTGGCAAGAGCTTATGTGCTAATTCGCAGCCTGA
AGCAGAGAGATCATATTTTGGTGAAATTTATGGAGGGATTAAGTTTTGTTCAAAATTACCTATCCAGAGAAAGCAGCAGC
CTAATTACCAAAAGCTGATAATAAAACATGCTAACCTGAAGAAACTCAGCCTTTGGGGCTGTTCAGCTCTGGATGCCCTG
TATGTAAATTGTCCAGAGCTGAGTGATCTCAATCTCAACTGTTGCACAAATCTTCATCCAGGTGCGATGTCTCTTCCTGA
AAATGCAGAACGGTTGCTTCTTCAGTGCCCAAGCTTGAAGGATGTACATGCCTCTGGGTGCCGTGACATGCTGATTGGAG
CAATCAGAAACCAGGTTCTGAATGAGTTTGCTTCAGCAGAGCCTCGGGTTCCTTGCAAGCGGCTAGCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7847.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis