Browse Element(s) Details


OsAffx.7853.1.S1_x_at

Description tigr:9640.m04028
TID=OsAffx.7853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=IQ calmodulin-binding motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4116011/11IQ calmodulin-binding motif family protein, expressed
LOC_Os03g435801/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41130OsAffx.1705.1.S1_at1/1112+25449767..25450808hypothetical protein
LOC_Os12g41130Os.27131.1.S1_at1/1112+25449767..25450808hypothetical protein
LOC_Os12g41140Os.7037.1.A1_s_at7/1112+25454030..25460115expressed protein
LOC_Os12g41150NANA12+25465655..25466982retrotransposon, putative, centromere-specific
LOC_Os12g41160OsAffx.7853.1.S1_x_at11/1112+25470289..25473205IQ calmodulin-binding motif family protein, expressed
LOC_Os12g41160OsAffx.25518.1.S1_x_at2/1112+25470289..25473205IQ calmodulin-binding motif family protein, expressed
LOC_Os12g41170Os.53126.1.S1_at11/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os12g41170Os.54285.1.S1_at1/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os12g41180Os.23412.1.S1_at11/1112+25484627..25488656LSTK-1-like kinase, putative, expressed
LOC_Os12g41190Os.22912.1.S1_at11/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed
LOC_Os12g41190Os.52703.3.S1_x_at1/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7853.1.S1_x_at--663--3931Chr12:25472613..25472637 (25 bp)
CGGCGAAGGGCGAGCTCTACCAGAA
LOC_Os12g41160
OsAffx.7853.1.S1_x_at--270--1591Chr12:25472625..25472649 (25 bp)
AGCTCTACCAGAAGGTGTCGCCGAC
LOC_Os12g41160
OsAffx.7853.1.S1_x_at--300--1831Chr12:25472648..25472672 (25 bp)
ACGCCGTCGGCGTTGACGGAGGCGA
LOC_Os12g41160
OsAffx.7853.1.S1_x_at--247--4611Chr12:25472669..25472693 (25 bp)
GCGAGCGCGCGGACAATGAGCGGCC
LOC_Os12g41160
OsAffx.7853.1.S1_x_at--637--9031Chr12:25472796..25472820 (25 bp)
TGCAGCAGCTGTTCCCGAAGAACTA
LOC_Os12g41160
OsAffx.7853.1.S1_x_at--326--5371Chr12:25472812..25472836 (25 bp)
GAAGAACTACATGTCGAACACGGAG
LOC_Os12g41160
OsAffx.7853.1.S1_x_at--313--9871Chr12:25472819..25472843 (25 bp)
TACATGTCGAACACGGAGTCGTCGC
LOC_Os12g41160
OsAffx.7853.1.S1_x_at--854--2472Chr12:25472828..25472852 (25 bp)
AACACGGAGTCGTCGCGCGCCAAGG
LOC_Os12g41160
OsAffx.7853.1.S1_x_at--1035--8251Chr12:25472874..25472898 (25 bp)
GGCAGCGGCACGACCAGCCGATCAG
LOC_Os12g41160
OsAffx.7853.1.S1_x_at--623--9151Chr12:25473089..25473113 (25 bp)
TGCCCGTGGGCAGTGAGGATGGACA
LOC_Os12g41160
OsAffx.7853.1.S1_x_at--299--8011Chr12:25473105..25473129 (25 bp)
GGATGGACAGGTCGACGGCGTCGCT
LOC_Os12g41160
Target Sequence 
CGGCGAAGGGCGAGCTCTACCAGAAGGTGTCGCCGACGCCGTCGGCGTTGACGGAGGCGAGCGCGCGGACAATGAGCGGC
CGGCTCGACGACTACTCCTTCTCCGCCGCGGCGTCCGAGGCCAGCGGGCGCCACCACAGCGTTCCAGCAGCCGCAGTCGC
CGGCGGCGACCACGCGGCGGCGCTGCAGCAGCTGTTCCCGAAGAACTACATGTCGAACACGGAGTCGTCGCGCGCCAAGG
CGCGGTCCCAGAGCGCGCCGAGGCAGCGGCACGACCAGCCGATCAGCGCCGCTGCCTCGCCGTCCCCTTCGCCGTCGTGC
GGCGAGTGGACGACGACGCCGGGCGACCGCCGGCGCAGGGCGTCGCTGGACCCGCGTGACCTCGCCGCCCCCGCCTCCGC
CGCCGGCGTCGGCGTCGGCGCGCGCATGGAGCGGTGCGCGTCGCAGGCGCGCGCCAGCGCCAGCGCGAGCGCGGCGTGCC
CGTGGGCAGTGAGGATGGACAGGTCGACGGCGTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7853.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis