Browse Element(s) Details


OsAffx.7903.3.S1_at

Description tigr:9631.m03771
TID=OsAffx.7903.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3928410/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39250OsAffx.22947.1.S1_x_at3/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.2.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250Os.52609.1.S1_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.5.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39250OsAffx.22947.3.S1_x_at1/113+21761343..21765910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39270OsAffx.13248.1.S1_at11/113+21770766..21772793hypothetical protein
LOC_Os03g39270Os.54506.1.S1_at11/113+21770766..21772793hypothetical protein
LOC_Os03g39284OsAffx.7903.3.S1_x_at11/113+21775288..21786085retrotransposon protein, putative, unclassified
LOC_Os03g39284OsAffx.7903.3.S1_at10/113+21775288..21786085retrotransposon protein, putative, unclassified
LOC_Os03g39284OsAffx.7903.2.S1_x_at5/113+21775288..21786085retrotransposon protein, putative, unclassified
LOC_Os03g39300NANA3+21792335..21792607hypothetical protein
LOC_Os03g39310Os.31929.3.S1_x_at1/113+21797392..21798352hypothetical protein
LOC_Os03g39310Os.31929.2.S1_x_at1/113+21797392..21798352hypothetical protein
LOC_Os03g39330OsAffx.22947.2.S1_x_at8/113+21803973..21808412retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39330OsAffx.22947.3.S1_x_at5/113+21803973..21808412retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39330OsAffx.22947.1.S1_x_at4/113+21803973..21808412retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39330OsAffx.22947.5.S1_x_at3/113+21803973..21808412retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39330Os.12341.1.S1_at1/113+21803973..21808412retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g39330Os.46715.1.S1_x_at1/113+21803973..21808412retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7903.3.S1_at--212--1471Chr03:21775648..21775763 (25 bp)
AGAAGGAGCTCAGGACTCCGGCGAT
LOC_Os03g39284
OsAffx.7903.3.S1_at--534--8371Chr03:21775629..21775653 (25 bp)
GGCGATGATGCCGTCCGTAGCCGTA
LOC_Os03g39284
OsAffx.7903.3.S1_at--741--3251Chr03:21775402..21775426 (25 bp)
CAACCGAGCAGCAATTCTCGTCGTT
LOC_Os03g39284
OsAffx.7903.3.S1_at--129--2631Chr03:21775401..21775425 (25 bp)
AACCGAGCAGCAATTCTCGTCGTTG
LOC_Os03g39284
OsAffx.7903.3.S1_at--237--1791Chr03:21775400..21775424 (25 bp)
ACCGAGCAGCAATTCTCGTCGTTGT
LOC_Os03g39284
OsAffx.7903.3.S1_at--747--4231Chr03:21775399..21775423 (25 bp)
CCGAGCAGCAATTCTCGTCGTTGTC
LOC_Os03g39284
OsAffx.7903.3.S1_at--630--9511Chr03:21775387..21775411 (25 bp)
TCTCGTCGTTGTCGTGCACAAGAGG
LOC_Os03g39284
OsAffx.7903.3.S1_at--295--3791Chr03:21775386..21775410 (25 bp)
CTCGTCGTTGTCGTGCACAAGAGGC
LOC_Os03g39284
OsAffx.7903.3.S1_at--517--9411Chr03:21775385..21775409 (25 bp)
TCGTCGTTGTCGTGCACAAGAGGCC
LOC_Os03g39284
OsAffx.7903.3.S1_at--717--7211Chr03:21775383..21775407 (25 bp)
GTCGTTGTCGTGCACAAGAGGCCGG
LOC_Os03g39284
Target Sequence 
AGAAGGAGCTCAGGACTCCGGCGATGATGCCGTCCGTAGCCGTAAGGCCGGGTTGTTGGACAGCGCGATCAAGTTCGAGG
ACGCCGTGGTGGGGAAGATGACCGCGTTGAAGGAGAAGCTCACGCGTGGCGCCGCCGCCTTCGTGGGGGAGGAGGAGATC
GTGCAGGCGCTGAACAAGCACGCCGCGACGGCCGAGGCGGAGATTGCAGAATCACAAGCGTTCTCTGCGGTCCTGTTAGC
CGATGCCAACCGAGCAGCAATTCTCGTCGTTGTCGTGCACAAGAGGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7903.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis