Browse Element(s) Details


OsAffx.7919.1.S1_at

Description gb:NM_197668.1
DB_XREF= gi:37536695
TID=OsAffx.7919.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015J15.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g404007/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40360Os.2881.1.S1_at10/1110+21288526..21290890Proline dehydrogenase family protein, expressed
LOC_Os10g40370Os.31837.2.S1_x_at11/1110+21293934..21295071expressed protein
LOC_Os10g40370Os.31837.1.A1_at11/1110+21293934..21295071expressed protein
LOC_Os10g40390Os.46878.1.S1_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40390Os.46878.2.S1_x_at11/1110+21297773..21307121GRAS family transcription factor containing protein, expressed
LOC_Os10g40400OsAffx.7919.1.S1_at7/1110+21315179..21319698retrotransposon protein, putative, unclassified
LOC_Os10g40410Os.6910.1.S1_at10/1110+21322347..21325319expressed protein
LOC_Os10g40420Os.26482.1.S1_at11/1110+21325706..21326566Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40430Os.4194.1.S1_at11/1110+21328407..21329181Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40440Os.46052.1.S1_at11/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40440Os.46629.1.S1_s_at1/1110+21332769..21333534Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40450OsAffx.20147.1.S1_x_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40450OsAffx.20147.1.S1_at11/1110+21335521..21336003hypothetical protein
LOC_Os10g40460Os.46629.1.S1_s_at5/1110+21337635..21338254Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40470Os.46629.1.S1_s_at1/1110+21341072..21341467Cortical cell delineating protein precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7919.1.S1_at--378--1711Chr10:21319409..21319432 (24 bp)
ACCAACTCCATCGTTTATCCATGGA
LOC_Os10g40400
OsAffx.7919.1.S1_at--839--8511Chr10:21319291..21319315 (25 bp)
TGGAAGTGTTCCACCCATGACATGT
LOC_Os10g40400
OsAffx.7919.1.S1_at--153--10331Chr10:21319213..21319237 (25 bp)
TTTCAATGTTTACGGCATTCCTCCT
LOC_Os10g40400
OsAffx.7919.1.S1_at--314--8291Chr10:21319200..21319224 (25 bp)
GGCATTCCTCCTGGGCAGTGGGTTA
LOC_Os10g40400
OsAffx.7919.1.S1_at--700--6531Chr10:21318186..21318210 (25 bp)
GATTTCAAGCTTATCCCACTGGGAG
LOC_Os10g40400
OsAffx.7919.1.S1_at--806--7991Chr10:21317155..21317179 (25 bp)
GGATGTTCAGAATTGGGCAGTACCC
LOC_Os10g40400
OsAffx.7919.1.S1_at--391--6991Chr10:21317136..21317160 (25 bp)
GTACCCACTACTGTCAAGAAGCTCA
LOC_Os10g40400
OsAffx.7919.1.S1_at--326--8351NONE
GGCTGGCTGGCGCATTACTAAGAAA
NONE
OsAffx.7919.1.S1_at--1053--871Chr10:21315141..21315165 (25 bp)
AGGCGCGACAAGGACTCTGACGAAG
NONE
OsAffx.7919.1.S1_at--618--5371Chr10:21315073..21315097 (25 bp)
GAAGCACCAGCGTATTACTAATCCT
NONE
OsAffx.7919.1.S1_at--346--2012Chr10:21320149..21320173 (25 bp)
ACTAATCCTAGATATGTTGGGCCGG
NONE
Target Sequence 
ACCAACTCCATCGTTTATCCATGGAGTACCAGAAGGGGGTAGTGGAAGTACTGGAATTATTGTTGGAAGTGTTCCACCCA
TGACATGTCCTCAGTTCAATGGGGATAATCCACAGATGTGGAAGGCTAATTGTGAAGTGTATTTCAATGTTTACGGCATT
CCTCCTGGGCAGTGGGTTAAGGGGCACAACTTTAGTAATGATTTCAAGCTTATCCCACTGGGAGAACCTAGAAAAATTTT
GGATGTTCAGAATTGGGCAGTACCCACTACTGTCAAGAAGCTCAGGGGATTTCTGGGGCTGGCTGGCGCATTACTAAGAA
AGGCACTGGCTTGGGGGCAAGCCGGTTTCCAAGGAAGGGAGAATGTCAGGATAAGCAAGGAAGCTGACGTTACCAAGAGG
AGGCGCGACAAGGACTCTGACGAAGTACAGGATGAAGGCGGAGGAGCAGAAGGCGTCTTTGAAAGAGAGAAGCACCAGCG
TATTACTAATCCTAGATATGTTGGGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7919.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis