Browse Element(s) Details


OsAffx.7944.1.S1_x_at

Description tigr:9638.m03524
TID=OsAffx.7944.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g390848/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39044NANA10+20482695..20484015hypothetical protein
LOC_Os10g39060OsAffx.30717.1.S1_at11/1110+20493681..20494537hypothetical protein
LOC_Os10g39070OsAffx.20169.1.S1_at11/1110+20495449..20497585retrotransposon protein, putative, LINE subclass
LOC_Os10g39080Os.56717.1.S1_at3/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39080OsAffx.30486.1.S1_at1/1110+20497965..20502998retrotransposon protein, putative, LINE subclass
LOC_Os10g39084OsAffx.7944.1.S1_x_at8/1110+20503845..20504176hypothetical protein
LOC_Os10g39090Os.55991.1.S1_s_at11/1110+20507751..20509331expressed protein
LOC_Os10g39090Os.55991.1.S1_at11/1110+20507751..20509331expressed protein
LOC_Os10g39100Os.46418.1.S1_at11/1110+20513152..20515234Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g39110OsAffx.18574.1.S1_x_at11/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39110OsAffx.22609.1.S1_x_at1/1110+20516599..20517823Alpha-expansin 7 precursor, putative
LOC_Os10g39120Os.9019.1.S1_at11/1110+20518225..20521635Ubiquitin-conjugating enzyme E2 I, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7944.1.S1_x_at--778--8031Chr10:20503671..20503695 (25 bp)
GGAGAGGCAGCGAACGGTGGCGTCT
NONE
OsAffx.7944.1.S1_x_at--248--7971Chr10:20503757..20503781 (25 bp)
GGATCTGGCCATCCCCTAGCTGGAT
NONE
OsAffx.7944.1.S1_x_at--923--3711Chr10:20503772..20503796 (25 bp)
CTAGCTGGATCCAGCCAGAGCGCGG
NONE
OsAffx.7944.1.S1_x_at--89--4611Chr10:20503931..20503952 (22 bp)
GCGAGCTGGATCTGGCCGGTGACGG
LOC_Os10g39084
OsAffx.7944.1.S1_x_at--887--471Chr10:20503937..20503961 (25 bp)
ATCTGGCCGGTGACGGCTCCTTGTG
LOC_Os10g39084
OsAffx.7944.1.S1_x_at--889--8291Chr10:20503951..20503975 (25 bp)
GGCTCCTTGTGGTGCGGAGGCGTCA
LOC_Os10g39084
OsAffx.7944.1.S1_x_at--358--7291Chr10:20503962..20503986 (25 bp)
GTGCGGAGGCGTCACGGCGTGAGAA
LOC_Os10g39084
OsAffx.7944.1.S1_x_at--188--4031Chr10:20503971..20503995 (25 bp)
CGTCACGGCGTGAGAAGGCGGCGGT
LOC_Os10g39084
OsAffx.7944.1.S1_x_at--758--4231Chr10:20504055..20504079 (25 bp)
CCGAGGTCCGGGAACTGCCAATGGC
LOC_Os10g39084
OsAffx.7944.1.S1_x_at--904--4191Chr10:20504090..20504114 (25 bp)
CCCTGGTGCCCGACAGCGATGGACA
LOC_Os10g39084
OsAffx.7944.1.S1_x_at--219--1651Chr10:20504104..20504128 (25 bp)
AGCGATGGACAGGAGGCGCGCTGCC
LOC_Os10g39084
Target Sequence 
GGAGAGGCAGCGAACGGTGGCGTCTGGGGAGTGGCGGCGGCGAGCCATCTCGGCGAGGAGGCGGCGGATCCGGCGCTGCC
TTCGCCGGATCTGGCCATCCCCTAGCTGGATCCAGCCAGAGCGCGGGCGGGCCGGCGACGAGGTGGCATCGGTGCGGAGC
GGCGAGCTGGATCTGGCCGGTGACGGCTCCTTGTGGTGCGGAGGCGTCACGGCGTGAGAAGGCGGCGGTGCTGGCGGTGG
AGGCCGCCGCGGCGCGGCAAGGTGCGCGACGCCGGCGCAGTGAGGTGGCCGAGGTCCGGGAACTGCCAATGGCGGTGGGG
AGCCCCTGGTGCCCGACAGCGATGGACAGGAGGCGCGCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7944.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis