Browse Element(s) Details


OsAffx.8023.1.S1_at

Description gb:NM_196991.1
DB_XREF= gi:37535341
TID=OsAffx.8023.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0044B19.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g358001/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g35750OsAffx.31313.1.S1_at11/1111+20483670..20486910hypothetical protein
LOC_Os11g35756Os.46306.1.S1_x_at2/1111+20487880..20490973transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35762Os.45976.1.S1_x_at3/1111+20491997..20496633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35762Os.45976.1.S1_at3/1111+20491997..20496633transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g35770NANA11+20498078..20499362retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35780OsAffx.19179.1.S1_at11/1111+20504026..20505551transposon protein, putative, unclassified
LOC_Os11g35790OsAffx.31314.1.S1_at10/1111+20508010..20509272hypothetical protein
LOC_Os11g35800OsAffx.8023.1.S1_at1/1111+20509826..20514193retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g35810OsAffx.31315.1.S1_at11/1111+20515324..20518688Leucine Rich Repeat family protein
LOC_Os11g35820OsAffx.19180.1.S1_at11/1111+20519494..20520716hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_x_at11/1111+20525626..20525968hypothetical protein
LOC_Os11g35830OsAffx.24712.2.S1_at8/1111+20525626..20525968hypothetical protein
LOC_Os11g35840NANA11+20530036..20535439Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8023.1.S1_at--944--8512Chr10:17377272..17377296 (25 bp)
TGGACCCGGTGCTGGGAACGTCAAC
NONE
OsAffx.8023.1.S1_at--421--8091Chr10:17377273..17377297 (25 bp)
GGACCCGGTGCTGGGAACGTCAACT
NONE
OsAffx.8023.1.S1_at--489--4252Chr10:17377277..17377301 (25 bp)
CCGGTGCTGGGAACGTCAACTCCAA
NONE
OsAffx.8023.1.S1_at--738--3952Chr10:17377278..17377302 (25 bp)
CGGTGCTGGGAACGTCAACTCCAAC
NONE
OsAffx.8023.1.S1_at--57--7771Chr10:17377279..17377303 (25 bp)
GGTGCTGGGAACGTCAACTCCAACG
NONE
OsAffx.8023.1.S1_at--1011--7271Chr10:17377280..17377304 (25 bp)
GTGCTGGGAACGTCAACTCCAACGG
NONE
OsAffx.8023.1.S1_at--1111--9111Chr10:17377281..17377305 (25 bp)
TGCTGGGAACGTCAACTCCAACGGA
NONE
OsAffx.8023.1.S1_at--233--4712Chr11:20509919..20509991 (25 bp)
GCTGGGAACGTCAACTCCAACGGAG
LOC_Os11g35800
OsAffx.8023.1.S1_at--64--8631Chr10:17377284..17377308 (25 bp)
TGGGAACGTCAACTCCAACGGAGAC
NONE
OsAffx.8023.1.S1_at--715--7591Chr10:17377285..17377309 (25 bp)
GGGAACGTCAACTCCAACGGAGACA
NONE
OsAffx.8023.1.S1_at--463--8171Chr10:17377286..17377310 (25 bp)
GGAACGTCAACTCCAACGGAGACAA
NONE
Target Sequence 
TGGACCCGGTGCTGGGAACGTCAACTCCAACGGAGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis