Browse Element(s) Details


OsAffx.8052.1.S1_at

Description gb:NM_196834.1
DB_XREF= gi:37535027
TID=OsAffx.8052.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0018F16.24), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3198011/11retrotransposon protein, putative, LINE subclass
LOC_Os05g246107/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31950Os.12690.1.S1_at11/1110+16445999..164502663-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os10g31970Os.50631.1.S1_at11/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31970Os.52572.1.S1_at9/1110+16458227..16471497SNF2 domain-containing protein, putative, expressed
LOC_Os10g31980OsAffx.8052.1.S1_at11/1110+16472092..16474654retrotransposon protein, putative, LINE subclass
LOC_Os10g31990OsAffx.30631.2.S1_at11/1110+16476292..16481256expressed protein
LOC_Os10g32010OsAffx.6832.1.S1_at11/1110+16490163..16491274hypothetical protein
LOC_Os10g32020Os.46821.2.S1_x_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.1.S1_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.2.S1_at7/1110+16491760..16495646expressed protein
LOC_Os10g32030OsAffx.30631.1.S1_at11/1110+16497198..16502018AT hook motif-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8052.1.S1_at--535--3991Chr10:16472634..16472658 (25 bp)
CGTGTCAGGCTTTCGGTTGCCAAAG
LOC_Os10g31980
OsAffx.8052.1.S1_at--469--10531Chr10:16472522..16472546 (25 bp)
TTCATGATGTGTTGTTGCTCCCCTC
LOC_Os10g31980
OsAffx.8052.1.S1_at--462--8212Chr05:14126912..14126936 (25 bp)
GGCAATTTTCTGTGGCGTCGGCCTA
LOC_Os05g24610
OsAffx.8052.1.S1_at--762--2231Chr10:16472413..16472437 (25 bp)
AAATTGTGCATTCGGCGAGCTGCTG
LOC_Os10g31980
OsAffx.8052.1.S1_at--11--9852Chr05:14127035..14127063 (25 bp)
TAAAGGACCGTTGCCTGCGGACAAC
LOC_Os05g24610
OsAffx.8052.1.S1_at--672--4592Chr05:14127072..14127096 (25 bp)
GCGAAACTGGCCACATGATGATCTG
LOC_Os05g24610
OsAffx.8052.1.S1_at--163--492Chr05:14127092..14127116 (25 bp)
ATCTGTGCTCACTTTGTCAGCGAGA
LOC_Os05g24610
OsAffx.8052.1.S1_at--389--3372Chr05:14127133..14127157 (25 bp)
CACCTGTTCGTTGCGTGTGATTACA
LOC_Os05g24610
OsAffx.8052.1.S1_at--454--4672Chr05:14127160..14127184 (25 bp)
GCGGTGTGGCGTTCTATCAAGCGAT
LOC_Os05g24610
OsAffx.8052.1.S1_at--412--5171Chr10:16472182..16472206 (25 bp)
GCAAGCTTTCCAATACCGGCAGATG
LOC_Os10g31980
OsAffx.8052.1.S1_at--612--3792Chr05:14127229..14127253 (25 bp)
CTCGCTGATTGGTGGCTGGCAACTA
LOC_Os05g24610
Target Sequence 
CGTGTCAGGCTTTCGGTTGCCAAAGCTCTCACCAACAATCGCTGGGTCCGCACACTGCAGGGGGCGCTGTCCAACGAGGC
GATGGGCGAGTTCTTCCAGCTTTGGGACGAAATTCATGATGTGTTGTTGCTCCCCTCGACGGATGAAATCAGGTGGAAAC
TGGCGAACGATGGGCAATTTTCTGTGGCGTCGGCCTACGACATGTTCTTCATGGCTACGGAAAATTGTGCATTCGGCGAG
CTGCTGTGGCACTCCAGAGCTCCCTCGCGAGTCCGCTTCTTCATGTGGCTTGCGCTAAAGGACCGTTGCCTGCGGACAAC
CTCGCCAAGCGAAACTGGCCACATGATGATCTGTGCTCACTTTGTCAGCGAGATGATGAGAACTGCCACCACCTGTTCGT
TGCGTGTGATTACACGGCGGCGGTGTGGCGTTCTATCAAGCGATGGTGCAATGCAAGCTTTCCAATACCGGCAGATGGGG
ACGCTGCCCTCGCTGATTGGTGGCTGGCAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis