Browse Element(s) Details


OsAffx.8098.1.S1_at

Description gb:NM_196640.1
DB_XREF= gi:37534639
TID=OsAffx.8098.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative non-LTR retroelement reverse transcriptase (OSJNBa0012D19.1), mRNA.
PROD=putative non-LTR retroelement reversetranscriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2973011/11retrotransposon protein, putative, LINE subclass
LOC_Os11g118801/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29680OsAffx.18451.1.S1_at11/1110+15107203..15108340hypothetical protein
LOC_Os10g29690OsAffx.18452.1.S1_at11/1110+15109238..15109714hypothetical protein
LOC_Os10g29700OsAffx.28148.1.S1_x_at11/1110+15114477..15115802hypothetical protein
LOC_Os10g29700OsAffx.16241.1.S1_at1/1110+15114477..15115802hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_x_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29720OsAffx.30596.1.S1_at1/1110+15121603..15125793hypothetical protein
LOC_Os10g29730OsAffx.8098.1.S1_at11/1110+15129500..15130174retrotransposon protein, putative, LINE subclass
LOC_Os10g29740OsAffx.20315.1.S1_at11/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.1.S1_x_at4/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29740Os.46868.3.S1_x_at2/1110+15133411..15136752BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.1.S1_x_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29750OsAffx.20311.2.S1_at11/1110+15137561..15139606BTB/POZ domain containing protein
LOC_Os10g29760OsAffx.20314.1.S1_at10/1110+15143270..15144280expressed protein
LOC_Os10g29760OsAffx.30600.1.S1_at1/1110+15143270..15144280expressed protein
LOC_Os10g29774OsAffx.20313.1.S1_x_at10/1110+15151818..15152707NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8098.1.S1_at--833--1231Chr10:15130065..15130089 (25 bp)
AGATTCGTCGCGGTTTTCTATGGGC
LOC_Os10g29730
OsAffx.8098.1.S1_at--217--3691Chr10:15130048..15130072 (25 bp)
CTATGGGCCGGGAAAGCTTCAGCAA
LOC_Os10g29730
OsAffx.8098.1.S1_at--380--3791Chr10:15129996..15130020 (25 bp)
CTCGGGTATGCTCCCCAAAGGAATA
LOC_Os10g29730
OsAffx.8098.1.S1_at--94--8652Chr11:6587225..6587249 (25 bp)
TGGGCTTCCCCGATCTCGAGAGGAT
LOC_Os11g11880
OsAffx.8098.1.S1_at--1015--2351Chr10:15129887..15129911 (25 bp)
AAAGCCTTGGCAGGGTCTTAGCATC
LOC_Os10g29730
OsAffx.8098.1.S1_at--229--1472Chr08:2993110..2993134 (25 bp)
AGAAGGAGCGCAACCTTGTCTCGCT
NONE
OsAffx.8098.1.S1_at--634--4811Chr10:15129830..15129854 (25 bp)
GCTCTCCTTGGTTTGCTCAGTGGGA
LOC_Os10g29730
OsAffx.8098.1.S1_at--495--1251Chr10:15129779..15129803 (25 bp)
AGATTGTTGGCTGCAGGGTGCTTCA
LOC_Os10g29730
OsAffx.8098.1.S1_at--610--1051Chr10:15129765..15129789 (25 bp)
AGGGTGCTTCAATTCGGTTGCTGGC
LOC_Os10g29730
OsAffx.8098.1.S1_at--1100--2371Chr10:15129700..15129724 (25 bp)
AAACGCACGGTGTCTGAGGCGCTGC
LOC_Os10g29730
OsAffx.8098.1.S1_at--1160--10611Chr10:15129594..15129618 (25 bp)
TTCGATCTGTGCAGCTGTCTGACAA
LOC_Os10g29730
Target Sequence 
AGATTCGTCGCGGTTTTCTATGGGCCGGGAAAGCTTCAGCAAGCGGTGGCGCATGCTGGGTTGCTTGGCCTCGGGTATGC
TCCCCAAAGGAATACGGTGGGCTGGGCTTCCCCGATCTCGAGAGGATGGGACTTGCTCTAAGGTCGAGATGGTTATGGCA
GCAGCGAACCTCGCCGGAAAAGCCTTGGCAGGGTCTTAGCATCCCGGTCTCGCAGAAGGAGCGCAACCTTGTCTCGCTCT
CCTTGGTTTGCTCAGTGGGAGATGGGAACTCGGTGTTGTTCTGGGAAGATTGTTGGCTGCAGGGTGCTTCAATTCGGTTG
CTGGCACCGGCTGTTTGGGCGGCTGTCCCAGGGCGGTTGCGGGGCAAACGCACGGTGTCTGAGGCGCTGCACGACAGGAG
ATGGATTCGCGATATCTCCTTGGCGTTAGGGATGCAAGCGATCCTTGAATACTTCAAGCTCTGGGAGCTCCTTCGATCTG
TGCAGCTGTCTGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis