Browse Element(s) Details


OsAffx.8119.1.S1_at

Description tigr:9638.m02423
TID=OsAffx.8119.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2856011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28520OsAffx.30574.1.S1_at11/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28520OsAffx.30576.2.S1_x_at1/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28530OsAffx.18427.1.S1_at11/1110+14519149..14519460hypothetical protein
LOC_Os10g28540OsAffx.30576.2.S1_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.2.S1_x_at11/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28540OsAffx.30576.1.S1_at7/1110+14521408..14523795CAF1 family ribonuclease containing protein
LOC_Os10g28550NANA10+14530455..14533213hypothetical protein
LOC_Os10g28560OsAffx.8119.1.S1_at11/1110+14535028..14535306hypothetical protein
LOC_Os10g28570Os.52595.1.S1_at11/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.1.S1_x_at9/1110+14540521..14542762expressed protein
LOC_Os10g28570OsAffx.6798.2.S1_at2/1110+14540521..14542762expressed protein
LOC_Os10g28580OsAffx.30572.2.S1_at11/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28580OsAffx.30576.2.S1_x_at1/1110+14545318..14548432CAF1 family ribonuclease containing protein, expressed
LOC_Os10g28590OsAffx.30576.1.S1_at11/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_x_at7/1110+14559459..14563008CAF1 family ribonuclease containing protein
LOC_Os10g28590OsAffx.30576.2.S1_at1/1110+14559459..14563008CAF1 family ribonuclease containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8119.1.S1_at--672--10372Chr02:8051511..8051535 (25 bp)
TTTTGCCGCCTCACCACTAGTTGGA
NONE
OsAffx.8119.1.S1_at--900--4452Chr02:8051518..8051542 (25 bp)
GCCTCACCACTAGTTGGATCTGGCA
NONE
OsAffx.8119.1.S1_at--171--3752Chr02:8051520..8051544 (25 bp)
CTCACCACTAGTTGGATCTGGCAGT
NONE
OsAffx.8119.1.S1_at--120--2033Chr06:27209997..27210473 (25 bp)
ACTAGTTGGATCTGGCAGTGCTCAC
NONE
OsAffx.8119.1.S1_at--516--1252Chr02:8051529..8051553 (25 bp)
AGTTGGATCTGGCAGTGCTCACACC
NONE
OsAffx.8119.1.S1_at--367--10872Chr02:8051531..8051555 (25 bp)
TTGGATCTGGCAGTGCTCACACCAT
NONE
OsAffx.8119.1.S1_at--195--6412Chr02:8051534..8051558 (25 bp)
GATCTGGCAGTGCTCACACCATCAG
NONE
OsAffx.8119.1.S1_at--75--8512Chr02:8051538..8051562 (25 bp)
TGGCAGTGCTCACACCATCAGCGGG
NONE
OsAffx.8119.1.S1_at--447--9032Chr02:8051625..8051649 (25 bp)
TGCAGCAGCAAGTTGGATTCGTCGG
NONE
OsAffx.8119.1.S1_at--215--1492Chr02:8051631..8051655 (25 bp)
AGCAAGTTGGATTCGTCGGGCGCCA
NONE
OsAffx.8119.1.S1_at--317--2812Chr02:8051634..8051658 (25 bp)
AAGTTGGATTCGTCGGGCGCCACTC
NONE
Target Sequence 
TTTTGCCGCCTCACCACTAGTTGGATCTGGCAGTGCTCACACCATCAGCGGGGACGTGTGGGCAAGGCGGTGGCCGGATA
TTGAAGGTGGGAGACGGTGGGAAGAGGAGGGGGATGCAGCAGCAAGTTGGATTCGTCGGGCGCCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis