Browse Element(s) Details


OsAffx.8254.1.S1_at

Description gb:NM_195889.1
DB_XREF= gi:37533137
TID=OsAffx.8254.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0052C09.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2040011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20350Os.46698.2.S1_x_at11/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.1.S1_at10/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20350Os.46698.3.S1_x_at3/1110+9900424..9903061MATE efflux family protein, expressed
LOC_Os10g20360OsAffx.30460.1.S1_at11/1110+9906462..9908158hypothetical protein
LOC_Os10g20370OsAffx.6707.1.S1_at11/1110+9909974..9910438hypothetical protein
LOC_Os10g20380Os.46698.2.S1_x_at4/1110+9911239..9912608TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os10g20390Os.46698.3.S1_x_at10/1110+9917907..9921184MatE family protein, expressed
LOC_Os10g20390Os.46698.3.S1_at8/1110+9917907..9921184MatE family protein, expressed
LOC_Os10g20400OsAffx.8254.1.S1_at11/1110+9927408..9930812retrotransposon protein, putative, unclassified
LOC_Os10g20410Os.45976.1.S1_x_at5/1110+9931979..9935144transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20420NANA10+9939731..9940222hypothetical protein
LOC_Os10g20430Os.46306.1.S1_x_at6/1110+9941426..9946497transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g20440OsAffx.20488.1.S1_at11/1110+9955022..9960740retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8254.1.S1_at--984--5972Chr10:9928805..9928829 (25 bp)
GAGAAAACTCTTTCGTTCTGAGGAA
LOC_Os10g20400
OsAffx.8254.1.S1_at--543--1831Chr10:9928843..9928867 (25 bp)
ACGCGCTGGTGGAAAGGATCCGCCA
LOC_Os10g20400
OsAffx.8254.1.S1_at--843--8071Chr10:9929234..9929258 (25 bp)
GGAGCTCCGGCGATTCACCGAGCTT
LOC_Os10g20400
OsAffx.8254.1.S1_at--1120--5911Chr10:9929253..9929277 (25 bp)
GAGCTTGCCATACCATCGGCCATGA
LOC_Os10g20400
OsAffx.8254.1.S1_at--479--7131Chr10:9929828..9929852 (25 bp)
GTCATTTGAATTAGTTGTGCTGCTC
LOC_Os10g20400
OsAffx.8254.1.S1_at--111--4911Chr10:9929858..9929882 (25 bp)
GCTTCTTCCCAATCCTAAGCTTGAA
LOC_Os10g20400
OsAffx.8254.1.S1_at--424--9791Chr10:9929873..9929897 (25 bp)
TAAGCTTGAAACCTCAGCGTTGTCA
LOC_Os10g20400
OsAffx.8254.1.S1_at--920--7071Chr10:9929894..9930021 (25 bp)
GTCAATATGTCTCAACACCGGTTCT
LOC_Os10g20400
OsAffx.8254.1.S1_at--526--10351Chr10:9930028..9930052 (25 bp)
TTTATGGTGCCATTTGGTCTCTGCA
LOC_Os10g20400
OsAffx.8254.1.S1_at--178--10251Chr10:9930040..9930062 (23 bp)
TTTGGTCTCTGCACAGCCATAAGAA
LOC_Os10g20400
OsAffx.8254.1.S1_at--213--3911Chr10:9930724..9930748 (25 bp)
CTGGATGTGGTTCACGATTCGTGCT
LOC_Os10g20400
Target Sequence 
GAGAAAACTCTTTCGTTCTGAGGAAGAATGCAAGCTGGACGCGCTGGTGGAAAGGATCCGCCAGCGCGTCTGGGCCAACG
ACGGCGAGATCCGCCAGCGCGTCGACCAGGACGCGGACATCGCCGCCGAGGCCGGCGCCAACGCGCGCTGGACCATCCTA
TCGCTCGCTCCCAGCTGCAGGGAGACATGGACGGGGTTCTCCATGGATGCGTTCAGGGAGCTCCGGCGATTCACCGAGCT
TGCCATACCATCGGCCATGATGGTTTGGAGTGGTTTGGATTATTCCAGCATGGAGTGGTGGTCATTTGAATTAGTTGTGC
TGCTCTCTGGGCTTCTTCCCAATCCTAAGCTTGAAACCTCAGCGTTGTCAATATGTCTCAACACCGGTTCTCTGATGTTT
ATGGTGCCATTTGGTCTCTGCACAGCCATAAGAAAATCCAACCTCAAATCTTGCAAATTTTGGATCACTGGATGTGGTTC
ACGATTCGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis