Browse Element(s) Details


OsAffx.8265.1.A1_at

Description gb:NM_195842.1
DB_XREF= gi:37533043
TID=OsAffx.8265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015I18.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1930011/11expressed protein
LOC_Os12g382101/11Spotted leaf protein 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19250OsAffx.20503.1.S1_at11/1110+9471708..9471978hypothetical protein
LOC_Os10g19270Os.52238.1.S1_at4/1110+9482486..9485306retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19280NANA10+9490426..9492119retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19290NANA10+9493260..9494777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19300OsAffx.20499.2.S1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_x_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.20499.1.S1_at10/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.12308.3.S1_x_at3/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.31640.1.S1_at1/1110+9496961..9500354expressed protein
LOC_Os10g19310OsAffx.8264.1.S1_at11/1110+9506620..9509870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19314Os.51388.1.S1_at1/1110+9512865..9513176hypothetical protein
LOC_Os10g19318NANA10+9514123..9514413hypothetical protein
LOC_Os10g19322NANA10+9515290..9518594transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.47463.1.S1_x_at5/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.14491.2.S1_x_at4/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8265.1.A1_at--298--9411Chr10:9499598..9499622 (25 bp)
TCGTCTTCCTTTGTTCCTGCTAGGG
LOC_Os10g19300
OsAffx.8265.1.A1_at--589--9231Chr10:9499604..9499628 (25 bp)
TCCTTTGTTCCTGCTAGGGTTCTTG
LOC_Os10g19300
OsAffx.8265.1.A1_at--28--9592Chr10:9499624..9499648 (25 bp)
TCTTGCGGCGGATTCGGCTGCTGGG
LOC_Os10g19300
OsAffx.8265.1.A1_at--980--9331Chr10:9499750..9499774 (25 bp)
TCGCGCTGCTTCTTGATTTTCTTCG
LOC_Os10g19300
OsAffx.8265.1.A1_at--426--4771Chr10:9499754..9499778 (25 bp)
GCTGCTTCTTGATTTTCTTCGATTC
LOC_Os10g19300
OsAffx.8265.1.A1_at--384--4911Chr10:9499757..9499781 (25 bp)
GCTTCTTGATTTTCTTCGATTCGTG
LOC_Os10g19300
OsAffx.8265.1.A1_at--308--9591Chr10:9499760..9499784 (25 bp)
TCTTGATTTTCTTCGATTCGTGGTC
LOC_Os10g19300
OsAffx.8265.1.A1_at--171--8831Chr10:9499763..9499787 (25 bp)
TGATTTTCTTCGATTCGTGGTCCTG
LOC_Os10g19300
OsAffx.8265.1.A1_at--514--171Chr10:9499765..9499789 (25 bp)
ATTTTCTTCGATTCGTGGTCCTGGC
LOC_Os10g19300
OsAffx.8265.1.A1_at--967--10311Chr10:9499767..9499791 (25 bp)
TTTCTTCGATTCGTGGTCCTGGCCG
LOC_Os10g19300
OsAffx.8265.1.A1_at--389--10631Chr10:9499771..9499795 (25 bp)
TTCGATTCGTGGTCCTGGCCGCCGG
LOC_Os10g19300
Target Sequence 
TCGTCTTCCTTTGTTCCTGCTAGGGTTCTTGCGGCGGATTCGGCTGCTGGGGCCCTTCGTGGAGGAGCTCCGGGAGCGGA
GGGGGGAGGGGGAGGAGGAGGAGGAGGAGGAGCGGGCGCTACCGCCGCTCGCCGCCGCGCTCGAGGCGGCGCTCGCGCTG
CTTCTTGATTTTCTTCGATTCGTGGTCCTGGCCGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8265.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis