Browse Element(s) Details


OsAffx.8277.2.S1_at

Description tigr:9639.m00853
TID=OsAffx.8277.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0905010/11hypothetical protein
LOC_Os07g365101/11hypothetical protein
LOC_Os05g355101/11hypothetical protein
LOC_Os01g365001/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09010Os.18467.1.S1_s_at11/1111+4781030..4785281Lipase family protein, expressed
LOC_Os11g09010Os.18467.1.S1_at11/1111+4781030..4785281Lipase family protein, expressed
LOC_Os11g09020Os.19070.1.S1_at11/1111+4795223..4797209amino acid carrier, putative, expressed
LOC_Os11g09030Os.51516.1.S1_at10/1111+4801112..4802662expressed protein
LOC_Os11g09040Os.51173.1.S1_at11/1111+4803347..4804519expressed protein
LOC_Os11g09050OsAffx.8277.2.S1_at10/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.29482.5.S1_x_at4/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.29482.3.S1_x_at2/1111+4806173..4808135hypothetical protein
LOC_Os11g09050OsAffx.25135.2.S1_x_at1/1111+4806173..4808135hypothetical protein
LOC_Os11g09060NANA11+4808948..4809909hypothetical protein
LOC_Os11g09070OsAffx.18756.1.S1_at11/1111+4814077..4817486hypothetical protein
LOC_Os11g09080OsAffx.30894.1.S1_at11/1111+4817864..4818233hypothetical protein
LOC_Os11g09089NANA11+4823274..4823704NA
LOC_Os11g09100OsAffx.18757.1.S1_at9/1111+4826099..4827968hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8277.2.S1_at--523--7557Chr05:5480505..5480997 (25 bp)
GTGGCCGGCCGGTATCATCTGATAC
NONE
OsAffx.8277.2.S1_at--712--9677Chr05:19877483..19877507 (24 bp)
TCACCTGATATGTGGTAGAATCGCA
NONE
OsAffx.8277.2.S1_at--396--5235Chr10:9174873..9174896 (24 bp)
GAATCGCATGGATACCTGGTAGGTA
NONE
OsAffx.8277.2.S1_at--669--4116Chr10:9174896..9174920 (25 bp)
ATCAGGACCTGATACATCGCAAGCA
NONE
OsAffx.8277.2.S1_at--47--81117Chr10:9174900..9174923 (24 bp)
GGACCTGATACATCGCAAGCATCAT
NONE
OsAffx.8277.2.S1_at--838--4111Chr11:4807407..4807431 (25 bp)
CGCAAGCATCATCCACAACGTGGTA
LOC_Os11g09050
OsAffx.8277.2.S1_at--261--33124Chr10:17208086..17208106 (21 bp)
CACAACGTGGTAAGAATCGCATGAT
NONE
OsAffx.8277.2.S1_at--432--6495Chr10:9174777..9175154 (25 bp)
GATACCTGATAGGATATCATTTGTG
NONE
OsAffx.8277.2.S1_at--301--1012Chr05:5481321..5481345 (25 bp)
AGGATATCATTTGTGAAACCTGATG
NONE
OsAffx.8277.2.S1_at--726--5771Chr11:4806424..4806864 (25 bp)
GACGATACTCGTGAGGATTCTCCGC
LOC_Os11g09050
OsAffx.8277.2.S1_at--692--9391Chr11:4806416..4806856 (25 bp)
TCGTGAGGATTCTCCGCCGTTCATG
LOC_Os11g09050
Target Sequence 
GTGGCCGGCCGGTATCATCTGATACCTCTTAAGTATCACCTGATATGTGGTAGAATCGCATGGATACCTGGTAGGTATCA
GGACCTGATACATCGCAAGCATCATCCACAACGTGGTAAGAATCGCATGATACCTGATAGGATATCATTTGTGAAACCTG
ATGATACCAGACATGATACAGATGAGGATCATGATACCTCCCAGGTATCATGCGATTCTACCACGTATCAGATATCGGAC
GATTCCTATCACGTATCAGACGATACTCGTGAGGATTCTCCGCCGTTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8277.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis