Browse Element(s) Details


OsAffx.8557.1.S1_at

Description tigr:9638.m00177
TID=OsAffx.8557.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative wall-associated protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0272011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02660Os.35344.18.S1_x_at10/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660Os.35344.3.S1_x_at9/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02660OsAffx.22940.5.S1_x_at3/1110+1025153..1031048transposon protein, putative, Mutator sub-class
LOC_Os10g02670Os.23274.1.A1_at10/1110+1032794..1034624expressed protein
LOC_Os10g02680Os.46880.1.S1_at10/1110+1037828..1038287hypothetical protein
LOC_Os10g02690OsAffx.18093.1.S1_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_s_at11/1110+1038976..1040777hypothetical protein
LOC_Os10g02690Os.46738.1.S1_at1/1110+1038976..1040777hypothetical protein
LOC_Os10g02700NANA10+1041615..1043792retrotransposon protein, putative, unclassified
LOC_Os10g02710OsAffx.20791.1.S1_at11/1110+1045167..1046615hypothetical protein
LOC_Os10g02720OsAffx.8557.1.S1_at11/1110+1051225..1054386Protein kinase domain containing protein
LOC_Os10g02740OsAffx.6558.1.S1_s_at11/1110+1061959..1064246hypothetical protein
LOC_Os10g02740OsAffx.6558.1.S1_at10/1110+1061959..1064246hypothetical protein
LOC_Os10g02750Os.11391.1.S1_at11/1110+1067094..1069131Acid phosphatase, putative, expressed
LOC_Os10g02760Os.26648.1.S1_at11/1110+1069316..1073690hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os10g02770Os.10574.1.S1_at10/1110+1076943..1081099Glycosyl hydrolases family 16 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8557.1.S1_at--506--3851Chr10:1051794..1051818 (25 bp)
CTGCAAGACATCCTTCACGGTGAGA
LOC_Os10g02720
OsAffx.8557.1.S1_at--730--5971Chr10:1051773..1051797 (25 bp)
GAGAACAAAGTTCCTCTCACTTTAG
LOC_Os10g02720
OsAffx.8557.1.S1_at--970--10011Chr10:1051751..1051775 (25 bp)
TAGACAAACGTTTGGCCATTGCTGC
LOC_Os10g02720
OsAffx.8557.1.S1_at--628--1471Chr10:1051717..1051741 (25 bp)
AGAAGGCCTGGCTTACATGCATTCC
LOC_Os10g02720
OsAffx.8557.1.S1_at--287--2771Chr10:1051692..1051716 (25 bp)
AAGACCTCAACTAGCATTCAACACG
LOC_Os10g02720
OsAffx.8557.1.S1_at--825--2171Chr10:1051672..1051696 (25 bp)
ACACGGTGACGTTAAGCCTGCCAAT
LOC_Os10g02720
OsAffx.8557.1.S1_at--565--8731Chr10:1051579..1051603 (25 bp)
TGTCACCGAGCACACTAACGATGTT
LOC_Os10g02720
OsAffx.8557.1.S1_at--1161--7331Chr10:1051520..1051544 (25 bp)
GTGAAACTGGTCTGCTAACTAACAA
LOC_Os10g02720
OsAffx.8557.1.S1_at--1069--2131Chr10:1051484..1051508 (25 bp)
ACAGTTTCGGTCTTGTGCTCTTTGA
LOC_Os10g02720
OsAffx.8557.1.S1_at--997--4791Chr10:1051468..1051492 (25 bp)
GCTCTTTGAAATCATCACCGGTAAG
LOC_Os10g02720
OsAffx.8557.1.S1_at--627--791Chr10:1051280..1051304 (25 bp)
ATGTGGACCAAAGGCCCGAGATGAC
LOC_Os10g02720
Target Sequence 
CTGCAAGACATCCTTCACGGTGAGAACAAAGTTCCTCTCACTTTAGACAAACGTTTGGCCATTGCTGCCGAATCTGCAGA
AGGCCTGGCTTACATGCATTCCAAGACCTCAACTAGCATTCAACACGGTGACGTTAAGCCTGCCAATATACTTTTGGACG
ATCAATTCAACCCAAAAATATCTGATTTTGGAATATCAAGGTTAATTGCAAGAGATGTCACCGAGCACACTAACGATGTT
ATTGGCGACAACAACTATATGGATCCAGTTTATCGTGAAACTGGTCTGCTAACTAACAAGAGTGATGTCTACAGTTTCGG
TCTTGTGCTCTTTGAAATCATCACCGGTAAGAAAGCTGTTTATGGTGGTGAAAGTAGCTTTGTCAGAAATTACCTTGACA
CATACTTAACTGAGATAAGAGCAAATAAGATGCTGTTTGGTAAGGAGGCTGAAGAAAAGGACATTGAGCATCTCCATAAT
CTTGTTGTGATATCCAAAGAGTGTTTAGACAATAATGTGGACCAAAGGCCCGAGATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis