Browse Element(s) Details


OsAffx.8624.1.S1_s_at

Description gb:XM_354436.1
DB_XREF= gi:35191394
TID=OsAffx.8624.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g139501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13930Os.14234.1.S1_at11/118+8335890..8340226mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os08g13940OsAffx.5808.1.S1_at11/118+8342110..8342613hypothetical protein
LOC_Os08g13950OsAffx.8624.1.S1_s_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13950OsAffx.8624.1.S1_x_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13950OsAffx.30891.1.S1_x_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13960OsAffx.19542.3.S1_x_at2/118+8360777..8366475retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13970Os.38395.1.S1_at9/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.4.S1_x_at9/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.3.S1_x_at8/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.2.S1_x_at7/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.5.S1_at2/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13980OsAffx.29184.1.S1_at11/118+8378227..8379456Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13980Os.45884.1.S1_x_at1/118+8378227..8379456Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13980Os.45884.1.S1_at1/118+8378227..8379456Glycosyl hydrolases family 16 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8624.1.S1_s_at--1006--1637Chr10:14135323..14135347 (25 bp)
AGCGCTAGATCCCTCCTGACGGTAG
NONE
OsAffx.8624.1.S1_s_at--939--4558Chr10:14135324..14135348 (25 bp)
GCGCTAGATCCCTCCTGACGGTAGT
NONE
OsAffx.8624.1.S1_s_at--817--41111Chr11:22358196..22358219 (24 bp)
CGCTAGATCCCTCCTGACGGTAGTC
NONE
OsAffx.8624.1.S1_s_at--354--5418Chr11:22355015..22355035 (21 bp)
GAACCGTATGGGGACTAACTAGGCT
NONE
OsAffx.8624.1.S1_s_at--877--4239Chr11:22355015..22355038 (24 bp)
CCGTATGGGGACTAACTAGGCTTAT
NONE
OsAffx.8624.1.S1_s_at--713--39910Chr11:22355015..22355039 (25 bp)
CGTATGGGGACTAACTAGGCTTATC
NONE
OsAffx.8624.1.S1_s_at--486--69110Chr11:22355016..22355040 (25 bp)
GTATGGGGACTAACTAGGCTTATCT
NONE
OsAffx.8624.1.S1_s_at--1048--10099Chr11:22355017..22355041 (25 bp)
TATGGGGACTAACTAGGCTTATCTC
NONE
OsAffx.8624.1.S1_s_at--357--8119Chr11:22358235..22358259 (25 bp)
GGACTAACTAGGCTTATCTCCGATG
NONE
OsAffx.8624.1.S1_s_at--324--5719Chr11:22358236..22358260 (25 bp)
GACTAACTAGGCTTATCTCCGATGT
NONE
OsAffx.8624.1.S1_s_at--473--20110Chr11:22358237..22358261 (25 bp)
ACTAACTAGGCTTATCTCCGATGTC
NONE
Target Sequence 
AGCGCTAGATCCCTCCTGACGGTAGTCGTAGGAACCGTATGGGGACTAACTAGGCTTATCTCCGATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8624.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis