Browse Element(s) Details


OsAffx.8723.1.S1_at

Description gb:XM_354151.1
DB_XREF= gi:35189735
GEN=OSJNBa0031C24.46
TID=OsAffx.8723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g046102/11hypothetical protein
LOC_Os07g153302/11hypothetical protein
LOC_Os05g066002/11hypothetical protein
LOC_Os02g138502/11Leucine Rich Repeat family protein, expressed
LOC_Os03g283601/11hypothetical protein
LOC_Os08g021301/11RNA recognition motif family protein, expressed
LOC_Os06g113601/11hypothetical protein
LOC_Os03g204001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04570Os.26983.1.S1_s_at11/111+2045519..2049320Protein kinase domain containing protein, expressed
LOC_Os01g04580Os.6149.1.S1_at11/111+2050385..2054438Protein kinase domain containing protein, expressed
LOC_Os01g04590Os.33939.1.A1_at9/111+2056111..2059077expressed protein
LOC_Os01g04600Os.27936.1.A1_at10/111+2060417..2062797expressed protein
LOC_Os01g04610OsAffx.1931.1.S1_at11/111+2065390..2066065hypothetical protein
LOC_Os01g04610OsAffx.8723.1.S1_at2/111+2065390..2066065hypothetical protein
LOC_Os01g04610Os.54405.1.S1_at1/111+2065390..2066065hypothetical protein
LOC_Os01g04620Os.21801.1.S1_at11/111+2068645..2070405expressed protein
LOC_Os01g04630Os.8796.1.S2_s_at11/111+2071567..2074705muconate cycloisomerase, putative, expressed
LOC_Os01g04640OsAffx.1932.1.S1_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04640Os.21448.1.S1_s_at11/111+2076907..2078342Reticulon family protein, expressed
LOC_Os01g04650Os.4763.1.S1_at11/111+2080483..2084005PB1 domain containing protein, expressed
LOC_Os01g04650Os.4763.1.S2_at11/111+2080483..2084005PB1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0003723molecular_functionRNA binding
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8723.1.S1_at--1153--6811Chr07:6635080..6635104 (25 bp)
GTTTACCAAGTAGCCAATCTTCTCC
NONE
OsAffx.8723.1.S1_at--7--10471Chr07:6635082..6635106 (25 bp)
TTACCAAGTAGCCAATCTTCTCCCT
NONE
OsAffx.8723.1.S1_at--127--4191Chr07:6635244..6635268 (25 bp)
CCCTCCCTCATGGAGGTGTCTAAGT
NONE
OsAffx.8723.1.S1_at--441--4191Chr07:6635248..6635272 (25 bp)
CCCTCATGGAGGTGTCTAAGTTCAG
NONE
OsAffx.8723.1.S1_at--524--96378Chr12:12355390..12355531 (25 bp)
TCATGGAGGTGTCTAAGTTCAGCGC
NONE
OsAffx.8723.1.S1_at--792--85577Chr12:12355512..12355534 (23 bp)
TGGAGGTGTCTAAGTTCAGCGCCAC
NONE
OsAffx.8723.1.S1_at--1145--97723Chr12:12355520..12355542 (23 bp)
TAAGTTCAGCGCCACACGATTTGTT
NONE
OsAffx.8723.1.S1_at--945--12125Chr12:12355522..12355542 (21 bp)
AGTTCAGCGCCACACGATTTGTTTT
NONE
OsAffx.8723.1.S1_at--973--105125Chr12:10285622..10285963 (25 bp)
TTCAGCGCCACACGATTTGTTTTTT
NONE
OsAffx.8723.1.S1_at--539--3431Chr07:6635503..6635527 (25 bp)
CAGATGCAAATGTGCCGCGGAGGGA
NONE
OsAffx.8723.1.S1_at--516--2191Chr07:6635557..6635581 (25 bp)
ACACACGGGAGGGAGTCGAATGGAC
NONE
Target Sequence 
GTTTACCAAGTAGCCAATCTTCTCCCTCCCCTCATCCTTATCCTCTCTGCCCTTCCTCCTCTCTCCCACCCCCCTCATCT
TTATCCACACTCCCTTCTCTGCCCTCTCTCCCCTTTCCCAGCCCCTTTCCATGCCAAGGCAACCCCTCCTCCTCTCTCCC
ACCCCCCTCCCTCATGGAGGTGTCTAAGTTCAGCGCCACACGATTTGTTTTTTTATGAGGGAGGCGGAAGCGGATGCGCC
GTAGGAGGGTGGGAGGGAGGGAGGGAGGCAGATGCAAATGTGCCGCGGAGGGAGAGAGGAAGGCGGAAGCGGAGAGGGGG
TGACACACGGGAGGGAGTCGAATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis