Browse Element(s) Details


OsAffx.9060.1.S1_at

Description gb:NM_193159.1
DB_XREF= gi:34913401
GEN=B1074C08.24
TID=OsAffx.9060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1074C08.24 (B1074C08.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3440011/11transposon protein, putative, Pong sub-class
LOC_Os06g329448/11transposon protein, putative, Pong sub-class, expressed
LOC_Os02g544306/11transposon protein, putative, Pong sub-class
LOC_Os11g179541/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34360Os.47463.1.S1_x_at3/111+19274199..19275538transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34360Os.14491.2.S1_x_at2/111+19274199..19275538transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34374NANA1+19275668..19283464transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g34390Os.17159.1.S1_at11/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34390Os.49333.1.S1_at1/111+19288165..19295852protoheme IX farnesyltransferase family protein, expressed
LOC_Os01g34400OsAffx.9060.1.S1_at11/111+19299540..19301255transposon protein, putative, Pong sub-class
LOC_Os01g34410Os.41074.1.S1_at3/111+19301812..19303778transposon protein, putative, Pong sub-class
LOC_Os01g34420Os.50056.1.S1_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420Os.50056.1.S1_x_at11/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.1.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34420OsAffx.23508.2.S1_at1/111+19304271..19305166transcription factor, putative, expressed
LOC_Os01g34430OsAffx.11314.1.S1_at10/111+19310796..19315354transcription factor, putative
LOC_Os01g34430Os.41072.1.S1_at4/111+19310796..19315354transcription factor, putative
LOC_Os01g34440OsAffx.9058.1.S1_at11/111+19317445..19318362hypothetical protein
LOC_Os01g34440Os.10191.1.S1_at1/111+19317445..19318362hypothetical protein
LOC_Os01g34450Os.36927.1.S1_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.5.S1_s_at11/111+19319632..19321821expressed protein
LOC_Os01g34450Os.36927.2.S1_x_at11/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.3.S1_at9/111+19319632..19321821expressed protein
LOC_Os01g34450OsAffx.29486.2.S1_x_at4/111+19319632..19321821expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9060.1.S1_at--958--1313Chr06:19187230..19187254 (25 bp)
AGAGGGCAGTTTACCCGCGGTGACT
LOC_Os06g32944
OsAffx.9060.1.S1_at--1039--1793Chr06:19187218..19187242 (25 bp)
ACCCGCGGTGACTATGGAGTGCCAA
LOC_Os06g32944
OsAffx.9060.1.S1_at--1131--3153Chr06:19187193..19187217 (25 bp)
CAATTATCCTCGAAGCGGTTGCTAC
LOC_Os06g32944
OsAffx.9060.1.S1_at--1126--7374Chr11:10060815..10060838 (24 bp)
GTGACCTCCGCATATGGCATGCTTT
LOC_Os11g17954
OsAffx.9060.1.S1_at--263--3192Chr06:19187098..19187122 (25 bp)
CAATCCCCACTATTTCTTGATGTGC
LOC_Os06g32944
OsAffx.9060.1.S1_at--1--9832Chr06:19187024..19187048 (25 bp)
TAACACAGGATACTACCTTGCTGAT
LOC_Os06g32944
OsAffx.9060.1.S1_at--167--3412Chr02:33344228..33344251 (24 bp)
CAGAATGGGCTACCTTTGTGAAGTC
LOC_Os02g54430
OsAffx.9060.1.S1_at--810--7353Chr06:19186972..19186996 (25 bp)
GTGAAGTCAATAGCTGCTCCACAAA
LOC_Os06g32944
OsAffx.9060.1.S1_at--844--7251Chr01:19300241..19300265 (25 bp)
GTCCTGCAGTCCCATTTCAATATTG
LOC_Os01g34400
OsAffx.9060.1.S1_at--286--192Chr06:19186866..19186889 (24 bp)
ATTTCAATATTGTGCGCCACCCAGC
LOC_Os06g32944
OsAffx.9060.1.S1_at--830--3351Chr01:19300211..19300235 (25 bp)
CACCCAGCACGGTCATGGAAACGGA
LOC_Os01g34400
Target Sequence 
AGAGGGCAGTTTACCCGCGGTGACTATGGAGTGCCAACAATTATCCTCGAAGCGGTTGCTACTCGTGACCTCCGCATATG
GCATGCTTTCTTCGGTGTCGCGGGGTCAAATAATGACATCAATGTGCTGAACCAATCCCCACTATTTCTTGATGTGCTGA
AAGGGGAAGCTCCTAGAGTAAAGTTTTCTGTCAATGGTAATGAGTATAACACAGGATACTACCTTGCTGATGGAATATAT
CCAGAATGGGCTACCTTTGTGAAGTCAATAGCTGCTCCACAAACAGGGAAGCACAAGCTATATGCACAGTATCAAGAAGG
GGCAAGGAAAGACGTGGAGTGTGCATTTGGGGTCCTGCAGTCCCATTTCAATATTGTGCGCCACCCAGCACGGTCATGGA
AACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis