Browse Element(s) Details


OsAffx.9077.1.S1_s_at

Description gb:NM_193053.1
DB_XREF= gi:34913189
GEN=P0506F02.15
TID=OsAffx.9077.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0506F02.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4349011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43430Os.41128.1.S1_at11/117+26003330..26005801expressed protein
LOC_Os07g43440OsAffx.16695.1.S1_s_at11/117+26007223..26008636expressed protein
LOC_Os07g43450OsAffx.28888.1.S1_x_at7/117+26011303..26011794hypothetical protein
LOC_Os07g43460Os.29063.2.S1_at11/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43460Os.29063.1.S1_at10/117+26013195..26016098Protein SUR2, putative, expressed
LOC_Os07g43470Os.10918.1.S1_at11/117+26017901..26023060Developmentally regulated GTP-binding protein 1, putative, expressed
LOC_Os07g43480OsAffx.28887.1.S1_at11/117+26024482..26026565hypothetical protein
LOC_Os07g43490OsAffx.9077.1.S1_s_at11/117+26028836..26029606hypothetical protein
LOC_Os07g43500NANA7+26031490..26033546hypothetical protein
LOC_Os07g43510Os.41122.1.S1_at5/117+26034746..2603524640S ribosomal protein S9, putative
LOC_Os07g43519Os.41122.1.S1_at2/117+26036782..26037535NA
LOC_Os07g43530Os.34549.1.S1_at10/117+26037984..26040531Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g43540OsAffx.16697.1.S1_at10/117+26042848..26045797origin recognition complex subunit 6, putative, expressed
LOC_Os07g43560Os.27650.1.S1_at10/117+26050527..26054189Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9077.1.S1_s_at--54--1791Chr07:26029483..26029507 (25 bp)
ACCGTCCCAGGTGAAGTGTGCGACA
LOC_Os07g43490
OsAffx.9077.1.S1_s_at--634--2871Chr07:26029470..26029494 (25 bp)
AAGTGTGCGACATGTTCGCCTCCAT
LOC_Os07g43490
OsAffx.9077.1.S1_s_at--690--9331Chr07:26029392..26029416 (25 bp)
TCGCCGTCGCGGACTGCATGAGCGC
LOC_Os07g43490
OsAffx.9077.1.S1_s_at--738--691Chr07:26029375..26029399 (25 bp)
ATGAGCGCGGCAGTGCTCCGCACAG
LOC_Os07g43490
OsAffx.9077.1.S1_s_at--812--5871Chr07:26028964..26028988 (25 bp)
GAGCCGCGGTACTACGGCACCAGCT
LOC_Os07g43490
OsAffx.9077.1.S1_s_at--805--8251Chr07:26028949..26028973 (25 bp)
GGCACCAGCTACACCTACTGGAGGA
LOC_Os07g43490
OsAffx.9077.1.S1_s_at--915--1731Chr07:26028937..26028961 (25 bp)
ACCTACTGGAGGACGGACGACACCG
LOC_Os07g43490
OsAffx.9077.1.S1_s_at--799--1851Chr07:26028921..26028945 (25 bp)
ACGACACCGAGTTCTTCTGCATGGA
LOC_Os07g43490
OsAffx.9077.1.S1_s_at--836--1211Chr07:26028912..26028936 (25 bp)
AGTTCTTCTGCATGGAGGACGCGTC
LOC_Os07g43490
OsAffx.9077.1.S1_s_at--606--4051Chr07:26028875..26028899 (25 bp)
CGATCTCGGCGATCCGCACAAGATA
LOC_Os07g43490
OsAffx.9077.1.S1_s_at--1126--4611Chr07:26028867..26028891 (25 bp)
GCGATCCGCACAAGATACCTGACAA
LOC_Os07g43490
Target Sequence 
ACCGTCCCAGGTGAAGTGTGCGACATGTTCGCCTCCATCGAGGCCATCGCCGTCTCCGGCGGCCTGGGCATGGCCGTCGT
CGTCTTCGGGGTCGCCGTCGCGGACTGCATGAGCGCGGCAGTGCTCCGCACAGGGGCGGGGTTCTTCGAGCCCGTCCCTC
CCCTCCACCTCGGCCCGCCGCTCGTCCTCGCCGCCGCAATGGACATCAAGGGCGACAGGAGAGGGCGGCCGGTGGAGGCC
ACGACGGCGCTCGTCGCGTCCCTGGCGTCGCGGAGGGAAGGGCCGACGCCGGGAGGAGCGGACGGCGGCGAGCCGCGGTA
CTACGGCACCAGCTACACCTACTGGAGGACGGACGACACCGAGTTCTTCTGCATGGAGGACGCGTCCCGGCGAGCCGCCG
ATCTCGGCGATCCGCACAAGATACCTGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9077.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis