Browse Element(s) Details


OsAffx.9194.1.S1_at

Description gb:NM_192508.1
DB_XREF= gi:34912099
GEN=OSJNBb0024F06.1
TID=OsAffx.9194.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0024F06.1 (OSJNBb0024F06.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4013010/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40080OsAffx.1885.1.S1_at11/111+22940988..22941618hypothetical protein
LOC_Os01g40094OsAffx.23595.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094Os.5367.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094OsAffx.23594.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40110Os.5450.1.S1_at10/111+22952103..22954885expressed protein
LOC_Os01g40120OsAffx.9194.3.A1_at11/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_x_at4/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.2.A1_at3/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.29420.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120Os.23259.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_s_at1/111+22959736..22964407expressed protein
LOC_Os01g40130OsAffx.9194.1.S1_at10/111+22966090..22967090retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g40140Os.38396.1.A1_at11/111+22968128..22969359hypothetical protein
LOC_Os01g40150OsAffx.21424.1.S1_at10/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40150OsAffx.11400.1.S1_s_at1/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40160OsAffx.21423.1.S1_at11/111+22977933..22980567F-box domain containing protein
LOC_Os01g40170OsAffx.11400.2.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_x_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_s_at10/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.1516.1.S1_at1/111+22983216..22991418translation initiation factor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9194.1.S1_at--976--5831Chr01:22965520..22965544 (25 bp)
GACCTCGATCGTGGGATGTCATGAT
NONE
OsAffx.9194.1.S1_at--246--5451Chr01:22966182..22966206 (25 bp)
GAACGAGCAGCTGTTTCGCCAGGAG
LOC_Os01g40130
OsAffx.9194.1.S1_at--143--8032Chr01:22966203..22966227 (25 bp)
GGAGTTCGCCGATGCAAGGTTCAAG
LOC_Os01g40130
OsAffx.9194.1.S1_at--731--1912Chr01:22966238..22966262 (25 bp)
ACGTGGAAGATTTCTCCGTTCGCCT
LOC_Os01g40130
OsAffx.9194.1.S1_at--809--3591Chr01:22966281..22966305 (25 bp)
CATTCGCGGCTTTGGAGGTGATCTC
LOC_Os01g40130
OsAffx.9194.1.S1_at--151--6591Chr01:22966469..22966493 (25 bp)
GATTGCCTCCAATGCCGAGGTTGAC
LOC_Os01g40130
OsAffx.9194.1.S1_at--336--10751Chr01:22966489..22966513 (25 bp)
TTGACGGTTATGAGGAGCGCCCATT
LOC_Os01g40130
OsAffx.9194.1.S1_at--536--72Chr01:22966511..22966535 (25 bp)
ATTCCTCGTAGTTGGTCCTCGTCAG
LOC_Os01g40130
OsAffx.9194.1.S1_at--862--7331Chr01:22966524..22966548 (25 bp)
GGTCCTCGTCAGAACCGGGTAGTAG
LOC_Os01g40130
OsAffx.9194.1.S1_at--1074--6931Chr01:22966542..22966566 (25 bp)
GTAGTAGACGGAGGCGCTCGACTCC
LOC_Os01g40130
OsAffx.9194.1.S1_at--557--5711Chr01:22966561..22966585 (25 bp)
GACTCCCTGACAACGCGTGGCTGGA
LOC_Os01g40130
Target Sequence 
GACCTCGATCGTGGGATGTCATGATCCAGTCGGAGCGCACGGGGCAGTCGGCATGGGAAGCAATCAAGACGGTGCGCATC
GGCACACGGCACGTGCAGGAGGTGAACGAGCAGCTGTTTCGCCAGGAGTTCGCCGATGCAAGGTTCAAGGATGGTGAAAA
CGTGGAAGATTTCTCCGTTCGCCTCACCGGTCTCGCCAACAGCATTCGCGGCTTTGGAGGTGATCTCCCTGAGCGAAACA
GCTGCTCGTTCCCCACCTGCACGAGTCGTGTGCCGACGCGCACCGTCTCGATTGCCTCCAATGCCGAGGTTGACGGTTAT
GAGGAGCGCCCATTCCTCGTAGTTGGTCCTCGTCAGAACCGGGTAGTAGACGGAGGCGCTCGACTCCCTGACAACGCGTG
GCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis