Browse Element(s) Details


OsAffx.9194.3.A1_at

Description tigr:9629.m03826
TID=OsAffx.9194.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4012011/11expressed protein
LOC_Os07g390101/11lactose permease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40074NANA1+22937713..22938570NA
LOC_Os01g40080OsAffx.1885.1.S1_at11/111+22940988..22941618hypothetical protein
LOC_Os01g40094OsAffx.23595.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094Os.5367.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40094OsAffx.23594.1.S1_at11/111+22944834..22950974Protein phosphatase 2C ABI2, putative, expressed
LOC_Os01g40110Os.5450.1.S1_at10/111+22952103..22954885expressed protein
LOC_Os01g40120OsAffx.9194.3.A1_at11/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_x_at4/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.2.A1_at3/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.29420.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120Os.23259.1.S1_at1/111+22959736..22964407expressed protein
LOC_Os01g40120OsAffx.2609.1.S1_s_at1/111+22959736..22964407expressed protein
LOC_Os01g40130OsAffx.9194.1.S1_at10/111+22966090..22967090retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g40140Os.38396.1.A1_at11/111+22968128..22969359hypothetical protein
LOC_Os01g40150OsAffx.21424.1.S1_at10/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40150OsAffx.11400.1.S1_s_at1/111+22971870..22976992Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os01g40160OsAffx.21423.1.S1_at11/111+22977933..22980567F-box domain containing protein
LOC_Os01g40170OsAffx.11400.2.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_x_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_at11/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.11400.1.S1_s_at10/111+22983216..22991418translation initiation factor, putative
LOC_Os01g40170OsAffx.1516.1.S1_at1/111+22983216..22991418translation initiation factor, putative

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9194.3.A1_at--432--4191Chr01:22961762..22962034 (25 bp)
CCCGATGGTGCTCCGATTTGGATAG
LOC_Os01g40120
OsAffx.9194.3.A1_at--1141--991Chr01:22961731..22961755 (25 bp)
AGGATCCAAGGCCATTGCAGGGTTC
LOC_Os01g40120
OsAffx.9194.3.A1_at--984--10711Chr01:22961717..22961741 (25 bp)
TTGCAGGGTTCCTTCAGCAAGCTGA
LOC_Os01g40120
OsAffx.9194.3.A1_at--317--1611Chr01:22961698..22961722 (25 bp)
AGCTGACCGTGCTTAATCTTGGTGA
LOC_Os01g40120
OsAffx.9194.3.A1_at--418--61717Chr12:23622372..23622854 (25 bp)
GAGGATGCGACGTGGATCACCGCCA
NONE
OsAffx.9194.3.A1_at--335--2931Chr01:22960032..22960056 (25 bp)
AAGGACATGCGCAGTCGACACGGTA
LOC_Os01g40120
OsAffx.9194.3.A1_at--829--6871Chr01:22959991..22960015 (25 bp)
GTATTGCGAGACGACCTGTTCAGAA
LOC_Os01g40120
OsAffx.9194.3.A1_at--22--7131Chr01:22959888..22959912 (25 bp)
GTCATGGAGCTAGCTATGGCTTTAC
LOC_Os01g40120
OsAffx.9194.3.A1_at--30--8311Chr01:22959871..22959895 (25 bp)
GGCTTTACAGACGATCATTTTGACT
LOC_Os01g40120
OsAffx.9194.3.A1_at--1024--6051Chr01:22959838..22959862 (25 bp)
GAGTTGCAATTACTATCGACCCACC
LOC_Os01g40120
OsAffx.9194.3.A1_at--1157--1411Chr01:22959779..22959803 (25 bp)
AGAAATCCTCCATAGTCAAGCAACT
LOC_Os01g40120
Target Sequence 
CCCGATGGTGCTCCGATTTGGATAGAACTTGAGGATCCAAGGCCATTGCAGGGTTCCTTCAGCAAGCTGACCGTGCTTAA
TCTTGGTGATGGCCAATATGAGTTGTTATGGATGATCTTCTTCCTTCAGGCAGCACCATTCCTCCAGAACTTCAACCTTT
CGGTTTCTCTAAAGCGGTGCCCCCAAGGAGGATGCGACGTGGATCACCGCCACCGCTCGTTCGGAACCGAGGCAAGGTTT
TCACCCGGAGAATATGGTAGGGAAAGGAAAGGGATACAGAAGGACATGCGCAGTCGACACGGTAGGCAGCAAGAGACGCC
GTATTGCGAGACGACCTGTTCAGAATTCAAGCACAAGCATCTGAAGAGCCTGAAGATTGCTGGCTTCAAAGTAGAGGAGA
AATACATGGAGTTTGTAAGAATGGTCATGGAGCTAGCTATGGCTTTACAGACGATCATTTTGACTGACGAAGAGAGTTGC
AATTACTATCGACCCACCCCGACAGGATCAAGGTATCCCAAGGGCGACAGGGAGAAATCCTCCATAGTCAAGCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9194.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis