Browse Element(s) Details


OsAffx.9333.1.S1_at

Description tigr:9629.m05118
TID=OsAffx.9333.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5267011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52630Os.16429.1.S1_at9/111+30578268..30581614Regulator of chromosome condensation family protein, expressed
LOC_Os01g52640Os.27322.2.S1_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.3.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.1.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52650Os.13994.1.S1_at11/111+30590230..30591228Pollen proteins Ole e I family protein, expressed
LOC_Os01g52660Os.5920.1.S1_at9/111+30599760..30600925Pollen proteins Ole e I family protein, expressed
LOC_Os01g52670OsAffx.9333.1.S1_at11/111+30603270..30604046expressed protein
LOC_Os01g52680Os.28015.1.S1_at10/111+30605264..30607659SRF-type transcription factor family protein, expressed
LOC_Os01g52690Os.23219.1.S1_at11/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52690Os.23219.2.S1_x_at10/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9333.1.S1_at--462--611Chr01:30603982..30604006 (25 bp)
ATGCGCATCATGGAGGTGGGACTCA
LOC_Os01g52670
OsAffx.9333.1.S1_at--581--3551Chr01:30603977..30604001 (25 bp)
CATCATGGAGGTGGGACTCACCGTG
LOC_Os01g52670
OsAffx.9333.1.S1_at--21--8971Chr01:30603937..30603961 (25 bp)
TGACAAGCGCGCCACGATGCAGACC
LOC_Os01g52670
OsAffx.9333.1.S1_at--220--6331Chr01:30603922..30603946 (25 bp)
GATGCAGACCCACCGTGGATACCGA
LOC_Os01g52670
OsAffx.9333.1.S1_at--88--8551Chr01:30603907..30603931 (25 bp)
TGGATACCGACCGACGGCTCGCGGG
LOC_Os01g52670
OsAffx.9333.1.S1_at--255--911Chr01:30603832..30603856 (25 bp)
AGGCGTACGGAGGTGCCTCAGAGGT
LOC_Os01g52670
OsAffx.9333.1.S1_at--641--4151Chr01:30603663..30603687 (25 bp)
CGCGCTCGAGATCCCTGGGCAGAGG
LOC_Os01g52670
OsAffx.9333.1.S1_at--485--1031Chr01:30603617..30603641 (25 bp)
AGGTCAGGAGCACTGTCGGTGCCGA
LOC_Os01g52670
OsAffx.9333.1.S1_at--668--5731Chr01:30603594..30603618 (25 bp)
GACGGCCCGGATTTGCCGGTGCTCA
LOC_Os01g52670
OsAffx.9333.1.S1_at--181--6531Chr01:30603585..30603609 (25 bp)
GATTTGCCGGTGCTCACCATTAACG
LOC_Os01g52670
OsAffx.9333.1.S1_at--1024--131Chr01:30603567..30603591 (25 bp)
ATTAACGCCAGCACCACGCGGAGCG
LOC_Os01g52670
Target Sequence 
ATGCGCATCATGGAGGTGGGACTCACCGTGCGGCAGCGACGGCGGTGACAAGCGCGCCACGATGCAGACCCACCGTGGAT
ACCGACCGACGGCTCGCGGGCGCTGCTCCCTTTACCTCCCTTCACCGTGGCGACGGGGCGGAGGTGGCTGAGGCGTACGG
AGGTGCCTCAGAGGTGGAGGCGGCTCCTCCGCTCTCGGGAGCGGCGGCGGCTGAAGGGGCAGGCACCGCCCGCCCTTCGC
ATCGGGCAATCTGGAGGTGGAGGTGGCTTCCCTGCCCTCGGGAGCGGTGGCGGCTGAGGGGGCAGGCGTCGTACGCCGCC
GCGCTCGAGATCCCTGGGCAGAGGGAGATGGGGGACGGATCGTGGAGGTCAGGAGCACTGTCGGTGCCGACGGCCCGGAT
TTGCCGGTGCTCACCATTAACGCCAGCACCACGCGGAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis