Browse Element(s) Details


OsAffx.9464.2.S1_x_at

Description tigr:9629.m05864
TID=OsAffx.9464.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5967011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59630Os.23590.1.A1_at10/111+34812128..34816646Exostosin family protein, expressed
LOC_Os01g59640OsAffx.9467.1.S1_at11/111+34817654..34819545No apical meristem protein, expressed
LOC_Os01g59660Os.2698.3.S1_x_at11/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59660OsAffx.30142.1.S1_x_at1/111+34835213..34839625Transcription factor GAMYB, putative, expressed
LOC_Os01g59670OsAffx.9464.2.S1_x_at11/111+34840966..34847732expressed protein
LOC_Os01g59670Os.23591.1.A1_at10/111+34840966..34847732expressed protein
LOC_Os01g59680Os.54928.1.S1_at11/111+34851347..34853377Harpin-induced protein 1 containing protein, expressed
LOC_Os01g59690Os.11125.1.S1_a_at11/111+34858623..34860620F-box family protein, putative, expressed
LOC_Os01g59700OsAffx.11667.1.S1_at11/111+34863722..34864295hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9464.2.S1_x_at--504--9291Chr01:34846712..34846736 (25 bp)
TCCGTCGACGACATATATGCTGCTT
LOC_Os01g59670
OsAffx.9464.2.S1_x_at--62--1991Chr01:34846751..34846775 (25 bp)
ACTGCTGCTATGAACAGTTCCTTCG
LOC_Os01g59670
OsAffx.9464.2.S1_x_at--92--10531Chr01:34846817..34846841 (25 bp)
TTCACCATGCATGATGAGCTTCCAG
LOC_Os01g59670
OsAffx.9464.2.S1_x_at--1151--2851Chr01:34846972..34846996 (25 bp)
AAGTGCTGCTGCGAATAGTTCCTTC
LOC_Os01g59670
OsAffx.9464.2.S1_x_at--997--6471Chr01:34847027..34847051 (25 bp)
GATACTGTAACATTCACCACGCACG
LOC_Os01g59670
OsAffx.9464.2.S1_x_at--659--3351Chr01:34847044..34847068 (25 bp)
CACGCACGATGAGCTTCCGGAAGGA
LOC_Os01g59670
OsAffx.9464.2.S1_x_at--1031--5831Chr01:34847111..34847135 (25 bp)
GAGCCTGAACCGATTGGGACTACAA
LOC_Os01g59670
OsAffx.9464.2.S1_x_at--679--7631Chr01:34847126..34847150 (25 bp)
GGGACTACAAGCAGCATGGACACTA
LOC_Os01g59670
OsAffx.9464.2.S1_x_at--535--10031Chr01:34847175..34847199 (25 bp)
TAGACGCAGTGTTCAAGAAGCTCTC
LOC_Os01g59670
OsAffx.9464.2.S1_x_at--462--1451Chr01:34847190..34847214 (25 bp)
AGAAGCTCTCTGATGGCGGTACCAA
LOC_Os01g59670
OsAffx.9464.2.S1_x_at--761--6971Chr01:34847208..34847232 (25 bp)
GTACCAAGAGTGCTGCCCAGGCAGT
LOC_Os01g59670
Target Sequence 
TCCGTCGACGACATATATGCTGCTTTGAAGGAGCACACAACTGCTGCTATGAACAGTTCCTTCGAAGAAAACGAAGACAA
GCATGGATGCGGTGATACTGTAAAATTCACCATGCATGATGAGCTTCCAGAAGGAACACATATTGAAGGTAACACAGTTG
GAGATGGTAAAGAGCCTGAACCAATGGGGATTACAAGCAGCATGGATGTCATTGATGCAAAATCCATCGATGACATATAT
GCTGCTTTGAAGAAGCAGTCAAGTGCTGCTGCGAATAGTTCCTTCGAACAAAACGAAGGCAAGAACGGATGTGGTGATAC
TGTAACATTCACCACGCACGATGAGCTTCCGGAAGGAACACACATTGAAGATAGGGATAATACAGTTGAAGATGGTAAAG
AGCCTGAACCGATTGGGACTACAAGCAGCATGGACACTATTGAGGTGAAAACAATTGATGACATAGACGCAGTGTTCAAG
AAGCTCTCTGATGGCGGTACCAAGAGTGCTGCCCAGGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9464.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis