Browse Element(s) Details


OsAffx.9516.1.S1_at

Description gb:NM_190817.1
DB_XREF= gi:34908717
GEN=OSJNBb0008G24.28
TID=OsAffx.9516.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) reverse transcriptase-like protein (OSJNBb0008G24.28), mRNA.
PROD=reverse transcriptase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6527011/11retrotransposon protein, putative, unclassified
LOC_Os08g277303/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65220Os.5254.1.S1_x_at11/111+38171772..381796275'-3' exoribonuclease, putative, expressed
LOC_Os01g65230Os.2328.1.S1_at11/111+38180254..38184359Protein kinase domain containing protein, expressed
LOC_Os01g65240Os.31886.1.S1_at11/111+38186938..38188979transposon protein, putative, Pong sub-class, expressed
LOC_Os01g65250OsAffx.21702.1.S1_at11/111+38189484..38191600transposon protein, putative, Pong sub-class
LOC_Os01g65260Os.30033.1.S1_at11/111+38192962..38194909Amidophosphoribosyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g65270OsAffx.9516.1.S1_at11/111+38201305..38202138retrotransposon protein, putative, unclassified
LOC_Os01g65280OsAffx.2412.1.S1_x_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65280OsAffx.2412.1.S1_at11/111+38205285..38206586hypothetical protein
LOC_Os01g65290OsAffx.12779.1.S1_at11/111+38208253..38210756retrotransposon protein, putative, unclassified
LOC_Os01g65300NANA1+38212812..38213426retrotransposon protein, putative, unclassified
LOC_Os01g65310Os.42329.1.A1_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65310Os.25066.1.S1_s_at11/111+38214459..38217304Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os01g65320Os.6400.1.S1_a_at11/111+38217483..38224296expressed protein
LOC_Os01g65330Os.9187.1.S1_at11/111+38225796..38233007expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9516.1.S1_at--368--1211Chr01:38201552..38201576 (25 bp)
AGTTTACACAGAACTCCTGGCATGT
LOC_Os01g65270
OsAffx.9516.1.S1_at--754--8731Chr01:38201574..38201598 (25 bp)
TGTCAAATTGCATCCTAACCTGTCC
LOC_Os01g65270
OsAffx.9516.1.S1_at--513--10032Chr08:16770596..16770620 (25 bp)
TAGAGCTGCACTCGCTTATGCAAAT
LOC_Os08g27730
OsAffx.9516.1.S1_at--147--2251Chr01:38201633..38201657 (25 bp)
AAATTCTGCACAGGTTTAGCCCCAT
LOC_Os01g65270
OsAffx.9516.1.S1_at--386--9992Chr08:16770706..16770725 (20 bp)
TACCAACTTCTGACTTACCACGGAA
LOC_Os08g27730
OsAffx.9516.1.S1_at--642--272Chr08:16770750..16770774 (25 bp)
ATATGTCTGGATACACACCATCCCA
LOC_Os08g27730
OsAffx.9516.1.S1_at--37--10291Chr01:38201891..38201915 (25 bp)
TTTGCCCGGCACTAGAATCAGCTGA
LOC_Os01g65270
OsAffx.9516.1.S1_at--720--5511Chr01:38201956..38201980 (25 bp)
GAAAAAATGAACCTCCTGCACCTGG
LOC_Os01g65270
OsAffx.9516.1.S1_at--45--8511Chr01:38201978..38202002 (25 bp)
TGGCAAACCATTCTGAATCGTCCTC
LOC_Os01g65270
OsAffx.9516.1.S1_at--828--2631Chr01:38202053..38202077 (25 bp)
AACCTATCTGGTTTGCAGCTTGTGC
LOC_Os01g65270
OsAffx.9516.1.S1_at--659--5051Chr01:38202067..38202091 (25 bp)
GCAGCTTGTGCATACACGTTGTGGA
LOC_Os01g65270
Target Sequence 
AGTTTACACAGAACTCCTGGCATGTCAAATTGCATCCTAACCTGTCCTACCAAGCAGAATTAGAGCTGCACTCGCTTATG
CAAATTCTGCACAGGTTTAGCCCCATCCCTGAGACTCCTGACACAAGAGTTCTTTTGCATCCTGCACCCAAGTTCTCAAC
CTCAAATGCCTACCAACTTCTGACTTACCACGGAACCCTTTGGAAACCGACAGAATATGTCTGGATACACACCATCCCAC
AAAACTGTAAGATCTTCCTTTGGTTGGCTTTCAAAGACAGGCTTAACACCAAGGCGAATATGGTCAACAAATGCTGGAGC
AAAGATCCGCACTGCCCTCTTTGCCCGGCACTAGAATCAGCTGACCACATCATCCAGAGATGCAAAAATGCTAATAGCCT
ATGGGAAAAAATGAACCTCCTGCACCTGGCAAACCATTCTGAATCGTCCTCAGCTTTTCTGCAAGCAGTCGTTGACAGAA
ATCATTCAAATAGAGGAATTGAACCTATCTGGTTTGCAGCTTGTGCATACACGTTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9516.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis