Browse Element(s) Details


OsAffx.9523.1.S1_x_at

Description gb:NM_190772.1
DB_XREF= gi:34908627
GEN=P0677H08.14
TID=OsAffx.9523.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative DNA polymerase alpha catalytic subunit (P0677H08.14), mRNA.
PROD=putative DNA polymerase alpha catalytic subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6482011/11DNA polymerase alpha catalytic subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64810Os.8978.1.S1_a_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64810Os.8978.3.S1_x_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64810Os.8978.2.S1_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64820OsAffx.9523.1.S1_x_at11/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64820Os.47313.1.A1_at10/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64830OsAffx.11734.2.S1_x_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.2.S1_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.3.S1_at10/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.1.S1_at1/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64840OsAffx.11734.1.S1_at11/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64840OsAffx.11734.2.S1_x_at1/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64850OsAffx.9521.1.S1_at11/111+37973868..37976141Subtilisin N-terminal Region family protein
LOC_Os01g64860Os.17663.1.S1_at11/111+37978683..37981230Subtilisin N-terminal Region family protein, expressed
LOC_Os01g64870Os.8109.1.S1_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64870Os.8109.1.S2_a_at11/111+37982293..37988083expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003887molecular_functionDNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9523.1.S1_x_at--492--7151Chr01:37954113..37954137 (25 bp)
GTCTAGCATGCTCTTGTCTGTAATT
LOC_Os01g64820
OsAffx.9523.1.S1_x_at--665--7171Chr01:37953918..37953942 (25 bp)
GTCTGATTATTGGTTCTAGCTCTGG
LOC_Os01g64820
OsAffx.9523.1.S1_x_at--1145--9671Chr01:37953854..37953878 (25 bp)
TAATTTTTGGCGTCGGATGCGGTGC
LOC_Os01g64820
OsAffx.9523.1.S1_x_at--556--3971Chr01:37953835..37953859 (25 bp)
CGGTGCCCAAGATGTCCAGATGACA
LOC_Os01g64820
OsAffx.9523.1.S1_x_at--299--8871Chr01:37953809..37953833 (25 bp)
TGATGAGTCCAGAGTTTCTCCTGCA
LOC_Os01g64820
OsAffx.9523.1.S1_x_at--809--6071Chr01:37953798..37953822 (25 bp)
GAGTTTCTCCTGCAGTACTTGCAAA
LOC_Os01g64820
OsAffx.9523.1.S1_x_at--269--8911Chr01:37953423..37953447 (25 bp)
TGAGAGAGGAACCATCTGCCCCAAC
LOC_Os01g64820
OsAffx.9523.1.S1_x_at--1105--4751Chr01:37953391..37953415 (25 bp)
GCTGCAATGGCCACCTAGTGAGACA
LOC_Os01g64820
OsAffx.9523.1.S1_x_at--120--331Chr01:37953288..37953312 (25 bp)
ATACGGAGGCAGATCTATACAGGCA
LOC_Os01g64820
OsAffx.9523.1.S1_x_at--965--1231Chr01:37953242..37953266 (25 bp)
AGTTGATGCAACTCGATGTCTTGAG
LOC_Os01g64820
OsAffx.9523.1.S1_x_at--902--891Chr01:37953117..37953141 (25 bp)
AGGCGCGGCTTCCTTTTGAGAAAGA
LOC_Os01g64820
Target Sequence 
GTCTAGCATGCTCTTGTCTGTAATTGATGATGAAGATGAGAGTCTGATTATTGGTTCTAGCTCTGGAAATGTATCAAATC
CAAATGAAGGAAATGATGCTTCCATTAATTTTTGGCGTCGGATGCGGTGCCCAAGATGTCCAGATGACACTGATGAGTCC
AGAGTTTCTCCTGCAGTACTTGCAAACCAGATGAAAAGGCAGGCTGATAGTTTCATCAATCTATATTATAAAGGTTTACT
GATGTGTGATGATGAGGGTTGCAAATACTCAACGCACAGTGTGAACCTTAGAGTGATGGGGGACTCTGAGAGAGGAACCA
TCTGCCCCAACTACCCACGCTGCAATGGCCACCTAGTGAGACAGTATACGGAGGCAGATCTATACAGGCAATTGTCATAC
TTTTGCTATGTAGTTGATGCAACTCGATGTCTTGAGAAGTTGGACCAGAAGGCGCGGCTTCCTTTTGAGAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9523.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis