Browse Element(s) Details


OsAffx.9532.1.S1_at

Description gb:NM_190654.1
DB_XREF= gi:34908391
GEN=P0529E05.22
TID=OsAffx.9532.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0529E05.22 (P0529E05.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g094605/11hypothetical protein
LOC_Os01g294885/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09430Os.18266.1.S1_at5/114+5020358..5023010Cytochrome P450 79A1, putative, expressed
LOC_Os04g09430Os.52963.2.S1_at2/114+5020358..5023010Cytochrome P450 79A1, putative, expressed
LOC_Os04g09450Os.9362.1.S1_at11/114+5039706..5040965hypothetical protein
LOC_Os04g09450OsAffx.3754.1.S1_at9/114+5039706..5040965hypothetical protein
LOC_Os04g09450OsAffx.17847.1.S1_at5/114+5039706..5040965hypothetical protein
LOC_Os04g09450Os.53286.1.S1_s_at1/114+5039706..5040965hypothetical protein
LOC_Os04g09460OsAffx.9532.1.S1_at5/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.9532.1.S1_x_at2/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.20947.1.S1_x_at1/114+5044791..5049783hypothetical protein
LOC_Os04g09460OsAffx.9652.1.S1_x_at1/114+5044791..5049783hypothetical protein
LOC_Os04g09470OsAffx.22699.1.S1_x_at1/114+5050590..5056287retrotransposon protein, putative, unclassified
LOC_Os04g09480Os.27691.1.S1_x_at3/114+5059343..5063896retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09490Os.27691.1.S1_x_at1/114+5064152..5065304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09490Os.27691.2.S1_x_at1/114+5064152..5065304retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g09500OsAffx.13733.1.S1_at11/114+5068557..5069099hypothetical protein
LOC_Os04g09510OsAffx.25940.1.S1_at11/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.22250.2.S1_x_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.20947.1.S1_x_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.9652.1.S1_x_at1/114+5070425..5072204hypothetical protein
LOC_Os04g09510OsAffx.18381.1.S1_at1/114+5070425..5072204hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9532.1.S1_at--162--89928Chr12:7057364..7057580 (25 bp)
TGAACGTGACTCTATCCATGCATGG
NONE
OsAffx.9532.1.S1_at--1161--25744Chr12:7057563..7057582 (20 bp)
AACGTGACTCTATCCATGCATGGCA
NONE
OsAffx.9532.1.S1_at--193--18946Chr12:7057563..7057583 (21 bp)
ACGTGACTCTATCCATGCATGGCAA
NONE
OsAffx.9532.1.S1_at--330--73744Chr12:7057563..7057584 (22 bp)
GTGACTCTATCCATGCATGGCAATT
NONE
OsAffx.9532.1.S1_at--792--89313Chr08:13555268..13555289 (22 bp)
TGACTCTATCCATGCATGGCAATTA
NONE
OsAffx.9532.1.S1_at--1127--7194Chr08:13429302..13429322 (21 bp)
GTCGTACACCAAGTCATATTGGCTG
NONE
OsAffx.9532.1.S1_at--705--7032Chr03:9258614..9258647 (25 bp)
GTACACCAAGTCATATTGGCTGCAT
NONE
OsAffx.9532.1.S1_at--5--2851Chr01:37114267..37114291 (25 bp)
AAGTCATATTGGCTGCATCACCTAA
NONE
OsAffx.9532.1.S1_at--824--7132Chr03:9258605..9258638 (25 bp)
GTCATATTGGCTGCATCACCTAACC
NONE
OsAffx.9532.1.S1_at--1103--2112Chr09:13438796..13438815 (20 bp)
ATATTGGCTGCATCACCTAACCAAG
NONE
OsAffx.9532.1.S1_at--354--594Chr07:8130757..8130780 (24 bp)
ATCCAATCGTAGCCGATCCAGACTT
NONE
Target Sequence 
TGAACGTGACTCTATCCATGCATGGCAATTATCTTGAAGCACCTCAACCCAACCCGATGTCGTACACCAAGTCATATTGG
CTGCATCACCTAACCAAGTCTGACTCCAATTCCGCCGATCCAATCGTAGCCGATCCAGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis