Browse Element(s) Details


OsAffx.9560.1.S1_at

Description tigr:9629.m06118
TID=OsAffx.9560.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Tat (twin-arginine translocation) pathway signal sequence, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6203011/11disease resistance-responsive family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61980Os.6795.1.S1_at11/111+36207873..36209261expressed protein
LOC_Os01g61990Os.16933.1.S1_at10/111+36211621..36215258ankyrin repeat family protein, putative, expressed
LOC_Os01g62000OsAffx.11689.1.S1_s_at11/111+36216652..36218214Pectate lyase family protein
LOC_Os01g62010Os.36919.2.S1_s_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_x_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62020Os.9835.2.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020Os.9835.1.S1_a_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020OsAffx.11691.1.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62030OsAffx.9560.1.S1_at11/111+36227584..36228075disease resistance-responsive family protein, putative
LOC_Os01g62040Os.38033.3.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.3.S1_x_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.1.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.2.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62050OsAffx.21763.2.S1_s_at11/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.2.S1_at10/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.1.S1_at2/111+36235334..36235956hypothetical protein
LOC_Os01g62060Os.30998.1.S1_at11/111+36238933..36240170uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g62070Os.10121.1.S1_at11/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_x_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62080Os.54716.1.S1_x_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080OsAffx.2386.1.S1_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080Os.20399.1.S1_s_at10/111+36250715..36256828Protein kinase AFC1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9560.1.S1_at--162--7231Chr01:36227889..36227913 (25 bp)
GTCGACGAGAGGTTCCACGGCAAGA
LOC_Os01g62030
OsAffx.9560.1.S1_at--990--5551Chr01:36227866..36227890 (25 bp)
GAAAGAGTTCGGGATGCCACTGGCT
LOC_Os01g62030
OsAffx.9560.1.S1_at--163--6351Chr01:36227854..36227878 (25 bp)
GATGCCACTGGCTGGGAAGCTTCAG
LOC_Os01g62030
OsAffx.9560.1.S1_at--355--5331Chr01:36227839..36227863 (25 bp)
GAAGCTTCAGGGAGTTCTCGTCACC
LOC_Os01g62030
OsAffx.9560.1.S1_at--913--991Chr01:36227807..36227831 (25 bp)
AGGATGACGACGATAGCCGTATTGT
LOC_Os01g62030
OsAffx.9560.1.S1_at--61--3451Chr01:36227780..36227804 (25 bp)
CAGTGACGGCCTTGTTTTCCGGCGA
LOC_Os01g62030
OsAffx.9560.1.S1_at--47--7271Chr01:36227724..36227748 (25 bp)
GTCCATCGCGACGACCAGGAAGAGT
LOC_Os01g62030
OsAffx.9560.1.S1_at--1125--5351Chr01:36227706..36227730 (25 bp)
GAAGAGTCTCACATCGCGGTGGTCG
LOC_Os01g62030
OsAffx.9560.1.S1_at--804--1771Chr01:36227655..36227679 (25 bp)
ACCGGTTTCGCCGTTGTCAGAGCAG
LOC_Os01g62030
OsAffx.9560.1.S1_at--692--9651Chr01:36227639..36227663 (25 bp)
TCAGAGCAGCTGACGCACATAAAGC
LOC_Os01g62030
OsAffx.9560.1.S1_at--772--8491Chr01:36227614..36227638 (25 bp)
TGGCAGAAATGTCAGCTCGAACTCA
LOC_Os01g62030
Target Sequence 
GTCGACGAGAGGTTCCACGGCAAGAAAGAGTTCGGGATGCCACTGGCTGGGAAGCTTCAGGGAGTTCTCGTCACCGGCCT
GGAGGATGACGACGATAGCCGTATTGTGGCAGTGACGGCCTTGTTTTCCGGCGACGGCGAGGAGGATAGCATCAGGTTCT
TCGGGGTCCATCGCGACGACCAGGAAGAGTCTCACATCGCGGTGGTCGGAGGGACAGGACGGTACGACGGCGCCACCGGT
TTCGCCGTTGTCAGAGCAGCTGACGCACATAAAGCTGGCAGAAATGTCAGCTCGAACTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis