Browse Element(s) Details


OsAffx.9762.1.S1_at

Description tigr:9629.m02855
TID=OsAffx.9762.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g297209/11hypothetical protein
LOC_Os03g319861/11retrotransposon protein, putative, unclassified, expressed
LOC_Os01g280001/11retrotransposon protein, putative, unclassified
LOC_Os07g274201/11retrotransposon protein, putative, unclassified
LOC_Os04g187301/11retrotransposon protein, putative, unclassified
LOC_Os02g093001/11hypothetical protein
LOC_Os12g037601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29680Os.31729.2.S1_x_at1/111+16956895..16959666retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g29690NANA1+16963803..16964305expressed protein
LOC_Os01g29700NANA1+16971595..16974900transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g29710Os.47463.1.S1_x_at5/111+16976394..16981237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g29710Os.14491.2.S1_x_at4/111+16976394..16981237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g29710Os.41934.1.A1_x_at2/111+16976394..16981237transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g29720OsAffx.9762.1.S1_at9/111+16982924..16983816hypothetical protein
LOC_Os01g29730NANA1+16984302..16985380hypothetical protein
LOC_Os01g29740Os.31177.1.S1_at11/111+16986600..16991281expressed protein
LOC_Os01g29750Os.41695.15.S1_s_at9/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29750Os.41695.5.S1_x_at8/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29750Os.41695.4.S1_x_at3/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29750Os.41695.2.S1_x_at3/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29750Os.41695.3.S1_x_at3/111+16991671..16998650SWIM zinc finger family protein
LOC_Os01g29760NANA1+17000663..17005278retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9762.1.S1_at--311--6392Chr01:16981820..16982255 (25 bp)
GATCGATTCGGGAACAGATTCTTAC
NONE
OsAffx.9762.1.S1_at--761--21386Chr12:12791895..12791914 (20 bp)
ACAGATTCTTACTTTCGGGTTGAGC
NONE
OsAffx.9762.1.S1_at--119--1834Chr03:18246477..18246508 (25 bp)
ACGCCTGGTGGGACCTATCAGAAGT
LOC_Os03g31986
OsAffx.9762.1.S1_at--1115--371Chr01:16983300..16983324 (25 bp)
ATCACAACAGCAGCTTTCCTCATGG
LOC_Os01g29720
OsAffx.9762.1.S1_at--687--4511Chr01:16983324..16983348 (25 bp)
GCCGAGAAACTAGTAGCATCGCCGT
LOC_Os01g29720
OsAffx.9762.1.S1_at--565--2432Chr01:16983376..16983400 (25 bp)
AAAAGATCCTGAAGCTGGGTCTATC
LOC_Os01g29720
OsAffx.9762.1.S1_at--402--2511Chr01:16983417..16983441 (25 bp)
AACATTGTGCCCATCACTTTTGATA
LOC_Os01g29720
OsAffx.9762.1.S1_at--650--3192Chr01:16983666..16983690 (25 bp)
CAATGAGACCAAGGTGATGGCTCTC
LOC_Os01g29720
OsAffx.9762.1.S1_at--205--991Chr01:16983692..16983716 (25 bp)
AGGAGTTCAAGGTATTGGCTCTCAA
LOC_Os01g29720
OsAffx.9762.1.S1_at--187--7891Chr01:16983732..16983756 (25 bp)
GGTTCTCAGGGATTTAAAGGTGCTA
LOC_Os01g29720
OsAffx.9762.1.S1_at--1135--2631Chr01:16983762..16983786 (25 bp)
AACCAAGTTAGTAACGCAGCACAGC
LOC_Os01g29720
Target Sequence 
GATCGATTCGGGAACAGATTCTTACTTTCGGGTTGAGCTGCATCGATTTCGATCTTCAACAAGAGGATCAAATCAACTGG
TACGCTAGCATACCCGAAGGCGAGTTTTGGACCTGCACTAGAGTTAAGCAGATCTCCCAGGCCTCGTGTTTTACGTCAAC
ACGCTTTTGGCACGCCTGGTGGGACCTATCAGAAGTCAGAATCACAACAGCAGCTTTCCTCATGGCCGAGAAACTAGTAG
CATCGCCGTCCTCGGCTGGTCCTGGCTCTGTTAAAGAAAAGATCCTGAAGCTGGGTCTATCTGAGATTGATGAAGCCAAC
ATTGTGCCCATCACTTTTGATAAATTGACACTTGAGCAGCAAAAAGATCTTGATACAATGATGCANTNATTCACGGAGAC
TCGCAAGGGAACATTAGTTCAGAAGTACAAAGTAAAGATGGTTTTCAATGAGACCAAGGTGATGGCTCTCAAGGAGTTCA
AGGTATTGGCTCTCAAGGAGTTCAAGGTGATGGTTCTCAGGGATTTAAAGGTGCTAATCTTAACCAAGTTAGTAACGCAG
CACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis