Browse Element(s) Details


OsAffx.9815.1.S1_at

Description gb:NM_188986.1
DB_XREF= gi:34905055
GEN=P0686C03.10
TID=OsAffx.9815.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0686C03.10 (P0686C03.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4036011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g3818011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g1600011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g3688010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g119109/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40320Os.45902.1.A1_x_at1/118+25395399..25398189hypothetical protein
LOC_Os08g40330OsAffx.29608.2.S1_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40330OsAffx.29608.3.S1_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40330OsAffx.29608.2.S1_s_at11/118+25401922..25403003Sulfotransferase domain containing protein
LOC_Os08g40340OsAffx.22004.1.S1_at11/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40340OsAffx.31069.1.S1_x_at1/118+25406605..25409319retrotransposon protein, putative, unclassified
LOC_Os08g40350Os.16483.2.S1_x_at11/118+25411254..25415947expressed protein
LOC_Os08g40350Os.43203.1.S1_x_at9/118+25411254..25415947expressed protein
LOC_Os08g40360OsAffx.9815.1.S1_at11/118+25418494..25424508transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g40370NANA8+25425286..25430466retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40380OsAffx.17432.1.S1_at11/118+25431600..25432598Sulfotransferase domain containing protein, expressed
LOC_Os08g40380OsAffx.29608.1.S1_s_at1/118+25431600..25432598Sulfotransferase domain containing protein, expressed
LOC_Os08g40390OsAffx.29608.4.S1_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.1.S1_s_at11/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40390OsAffx.29608.2.S1_s_at1/118+25434000..25434975Sulfotransferase domain containing protein
LOC_Os08g40410Os.5392.1.S1_at11/118+25442277..25444214ACT domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9815.1.S1_at--361--1074Chr08:24061336..24061360 (25 bp)
AGGGAGATTCTTGAGTTGCAGTATA
LOC_Os08g38180
OsAffx.9815.1.S1_at--368--435Chr08:24061375..24061399 (25 bp)
ATCTATCGATCGGTGGTTCTTTTCC
LOC_Os08g38180
OsAffx.9815.1.S1_at--389--6734Chr08:24061390..24061414 (25 bp)
GTTCTTTTCCGTTGTGATTGGTTCA
LOC_Os08g38180
OsAffx.9815.1.S1_at--671--35Chr08:24061406..24061430 (25 bp)
ATTGGTTCAATCAAGTTGGCAAGAC
LOC_Os08g38180
OsAffx.9815.1.S1_at--781--5755Chr08:24061447..24061471 (25 bp)
GACGGGCATTTCAAATCCATCAACA
LOC_Os08g38180
OsAffx.9815.1.S1_at--222--7975Chr08:24061491..24061515 (25 bp)
GGATGACCCTTTCATTTTAGCAACT
LOC_Os08g38180
OsAffx.9815.1.S1_at--737--6515Chr08:24061527..24061551 (25 bp)
GATATTTTACTTGCAGGACACCTCT
LOC_Os08g38180
OsAffx.9815.1.S1_at--432--955Chr08:24061541..24061565 (25 bp)
AGGACACCTCTTTGGGCAACGAATG
LOC_Os08g38180
OsAffx.9815.1.S1_at--944--5835Chr08:24061621..24061644 (24 bp)
GACCACATTTTTGATGTACACCAAA
LOC_Os08g38180
OsAffx.9815.1.S1_at--331--8894Chr08:24061695..24061719 (25 bp)
TGAGGATCTAGACCATTTGCAGGAA
LOC_Os08g38180
OsAffx.9815.1.S1_at--438--5355Chr08:24061753..24061777 (25 bp)
GAAGACCTTAACAACCAAGCTAACT
LOC_Os08g38180
Target Sequence 
AGGGAGATTCTTGAGTTGCAGTATAACTCTGATCTAGATATCTATCGATCGGTGGTTCTTTTCCGTTGTGATTGGTTCAA
TCAAGTTGGCAAGACAAAAGGAGTTAGGGATGACGGGCATTTCAAATCCATCAACATCCAATCATTTTGGTACAAGGATG
ACCCTTTCATTTTAGCAACTCAATCGAAGAAGATATTTTACTTGCAGGACACCTCTTTGGGCAACGAATGGCGAATTGTG
CAGAAATTCGAACATAGGAACATGTATAATGTGTCTGAAAAAGATGACCACATTTTTGATGTACACCAAAATGATAATTG
TTCTGATACAGAACATGAAGTGCATGAAGGTAATGCTGATGAGGATCTAGACCATTTGCAGGAAGATGGAGAAGTTACTA
TTATTGAAGCTAATTTAGAAGACCTTAACAACCAAGCTAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis