Browse Element(s) Details


OsAffx.9909.2.S1_x_at

Description gb:NM_189871.1
DB_XREF= gi:34906825
GEN=P0594D10.26
TID=OsAffx.9909.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) beta-tonoplast intrinsic protein-like (P0594D10.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g121804/11expressed protein
LOC_Os10g350502/11Aquaporin TIP3.1, putative, expressed
LOC_Os11g018901/11expressed protein
LOC_Os12g019501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12150OsAffx.32171.1.S1_x_at11/111+6613534..6615625hypothetical protein
LOC_Os01g12150OsAffx.32171.2.S1_at7/111+6613534..6615625hypothetical protein
LOC_Os01g12150Os.49487.1.S1_at1/111+6613534..6615625hypothetical protein
LOC_Os01g12160Os.34283.1.S1_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12160Os.34283.2.S1_x_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12170OsAffx.380.1.S1_at4/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12170OsAffx.29576.2.S1_x_at1/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12180Os.33971.1.S1_at11/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.1.S1_at9/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.2.S1_x_at4/111+6639467..6643094expressed protein
LOC_Os01g12190Os.47598.1.S1_at11/111+6646595..6647321expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_x_at9/111+6649926..6652092expressed protein
LOC_Os01g12200Os.3507.1.S1_at8/111+6649926..6652092expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_at4/111+6649926..6652092expressed protein
LOC_Os01g12210Os.26807.1.S1_at10/111+6655951..6659315Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g12220OsAffx.1987.1.S1_at11/111+6660335..6662262Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os01g12230Os.43450.1.S1_at11/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12230OsAffx.26711.2.S1_at1/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9909.2.S1_x_at--655--9512Chr07:25694168..25694192 (25 bp)
TCTCTCTTCTTTCCGGGCGGCGGAC
NONE
OsAffx.9909.2.S1_x_at--910--891Chr07:25694113..25694137 (25 bp)
AGGCGCGCTGTCCAATGTCGACTAT
NONE
OsAffx.9909.2.S1_x_at--45--8711Chr07:25694105..25694129 (25 bp)
TGTCCAATGTCGACTATGACCACCT
NONE
OsAffx.9909.2.S1_x_at--873--2971Chr07:25694100..25694124 (25 bp)
AATGTCGACTATGACCACCTGCTCG
NONE
OsAffx.9909.2.S1_x_at--425--1375Chr12:562308..562332 (25 bp)
AGAGCTTCGTCTCCACGCAGGACTC
LOC_Os12g01950
OsAffx.9909.2.S1_x_at--122--8593Chr06:1762430..1762454 (25 bp)
TGGTCGACTACTCCGGCAACGAGGA
NONE
OsAffx.9909.2.S1_x_at--138--9251Chr07:25693947..25693971 (25 bp)
TCCGGCAACGAGGACAAATTCCACG
NONE
OsAffx.9909.2.S1_x_at--354--7432Chr06:1762665..1762689 (25 bp)
GTGTTTGGCACAGCGCTCGTCGGCT
NONE
OsAffx.9909.2.S1_x_at--595--9411Chr07:25693707..25693731 (25 bp)
TCGTCGGCTGGCACTGGAGGCACCA
NONE
OsAffx.9909.2.S1_x_at--774--5073Chr10:18372545..18372569 (25 bp)
GCACCACTGGGTGTACTGGCTCGGC
LOC_Os10g35050
OsAffx.9909.2.S1_x_at--401--7593Chr10:18372594..18372618 (25 bp)
GGGCTTCTCTACGAGTACCTCGTCA
LOC_Os10g35050
Target Sequence 
TCTCTCTTCTTTCCGGGCGGCGGACGGCACGGGTGGGCGGCGAAGCAGGCGAGCGAGGCGCGCTGTCCAATGTCGACTAT
GACCACCTGCTCGCCCCCGTCAAGGCGTCGCCGCGGCCGCTGTCCAGGGAGGGCGAGGAGGAGGAGGGGGACATCGCCAT
GGTCGCCGCCCAGAGCTTCGTCTCCACGCAGGACTCCGCCTCCGACACCGTGGTCGACTACTCCGGCAACGAGGACAAAT
TCCACGAGGTACCTGAACCCCGACGACGACGGCCGTTCGACGGCACCGGGATGAACCTGGCGAGGGTGTTTGGCACAGCG
CTCGTCGGCTGGCACTGGAGGCACCACTGGGTGTACTGGCTCGGCCCCTTCATCGGTGCCGGCCTCGCCGGGCTTCTCTA
CGAGTACCTCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9909.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis