Browse Element(s) Details


OsAffx.9929.1.S1_at

Description gb:NM_188407.1
DB_XREF= gi:34903897
TID=OsAffx.9929.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g558601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55810NANA3+31714944..31715444hypothetical protein
LOC_Os03g55820Os.7451.1.S1_at11/113+31717263..31720334Thioredoxin family protein, expressed
LOC_Os03g55830Os.57276.1.S1_at11/113+31724092..31727019transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g55840Os.53613.1.S1_at10/113+31727027..31728145expressed protein
LOC_Os03g55850Os.8017.1.S1_at11/113+31729548..31732200cold acclimation protein COR413-PM1, putative, expressed
LOC_Os03g55860Os.46012.2.S1_x_at8/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.27088.1.A1_x_at6/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.46012.3.S1_x_at4/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.10263.1.S1_at2/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.54691.1.S1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.45902.1.A1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860OsAffx.22442.1.S1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860OsAffx.9929.1.S1_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55870Os.17653.1.S1_at11/113+31741251..31743092integral membrane protein, putative, expressed
LOC_Os03g55874OsAffx.30475.9.S1_s_at11/113+31758639..31759900ATP synthase beta chain, putative
LOC_Os03g55874OsAffx.30475.1.S1_s_at11/113+31758639..31759900ATP synthase beta chain, putative
LOC_Os03g55874OsAffx.30475.5.S1_x_at10/113+31758639..31759900ATP synthase beta chain, putative
LOC_Os03g55880NANA3+31763214..31763636hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9929.1.S1_at--227--7211Chr01:6097892..6097916 (25 bp)
GTCGTCGTTGTTTACTTCTCAGTGA
NONE
OsAffx.9929.1.S1_at--697--10571Chr01:6097907..6097931 (25 bp)
TTCTCAGTGAGGTGTACTCCTACTC
NONE
OsAffx.9929.1.S1_at--900--10371Chr01:6097949..6097973 (25 bp)
TTATTTCCCCTCATTGCTCGAGTTA
NONE
OsAffx.9929.1.S1_at--1015--51Chr01:6097961..6097985 (25 bp)
ATTGCTCGAGTTATTATGGCCTAAA
NONE
OsAffx.9929.1.S1_at--1115--8451Chr01:6097977..6098001 (25 bp)
TGGCCTAAAATACGGCTCCAGCGCT
NONE
OsAffx.9929.1.S1_at--1035--5891Chr01:6098007..6098031 (25 bp)
GAGCTCCGTGCAAGGCTACAATCAG
NONE
OsAffx.9929.1.S1_at--881--1471Chr01:6098184..6098203 (20 bp)
AGAATTTTACGCCTGCATTTGCACT
NONE
OsAffx.9929.1.S1_at--1061--1931Chr01:6098201..6098225 (25 bp)
ACTGTGCCATTTGTTTGGACCGCCA
NONE
OsAffx.9929.1.S1_at--834--2731Chr01:6098288..6098311 (24 bp)
AAGAAACGGTTTTGGCACTGCAGGA
NONE
OsAffx.9929.1.S1_at--872--4679Chr09:2113974..2113998 (25 bp)
GCGGTCGGACCGGAGATATAATCTC
NONE
OsAffx.9929.1.S1_at--228--1351Chr01:6100209..6100228 (20 bp)
AGACCGGCAAGACAACTTCGAGAAA
NONE
Target Sequence 
GTCGTCGTTGTTTACTTCTCAGTGAGGTGTACTCCTACTCCGTAGTCCGTACTCCCCTTATTTCCCCTCATTGCTCGAGT
TATTATGGCCTAAAATACGGCTCCAGCGCTGCTGCGAGCTCCGTGCAAGGCTACAATCAGAATTTTACGCCTGCATTTGC
ACTGTGCCATTTGTTTGGACCGCCAGGCCCAGTTCATATCGTAAGCAAAAAATGTGACTATGGAGATCTATTGATTGGGG
TAGATCTAAGAAACGGTTTTGGCACTGCAGGAGAATCAATAAAGTCGTCATCTACTTTAAGAGTTCTTCGATTTGTGTTT
ACCGGGTTCCGGCGGTCCAACCGGCGATCTACCGGCGGTCAGACCAGCGGCAAGCGGCGGTCAGACCGACGGCAGCGACA
GCGAGAAGCAGCTGATCTCGGCGGTCGGACCGGAGATATAATCTCGGTTAGACCGACGGCAACCAGGCTGTCAGACCGGC
AAGACAACTTCGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis