Browse Element(s) Details


OsAffx.9936.2.S1_at

Description tigr:9629.m01072
TID=OsAffx.9936.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1117011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11150Os.30473.1.S1_at11/111+5965621..5969291oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g11160Os.33762.1.S1_at11/111+5980426..5982677Amino acid permease family protein, expressed
LOC_Os01g11170OsAffx.9936.2.S1_at11/111+5987755..5988636expressed protein
LOC_Os01g11190OsAffx.23196.1.S1_at9/111+5991588..5992257hypothetical protein
LOC_Os01g11200OsAffx.23197.1.S1_at11/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23197.2.S1_at10/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.11754.1.S1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23846.1.A1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11210Os.31675.1.S1_at11/111+6000326..6001671expressed protein
LOC_Os01g11210Os.31675.2.S1_x_at10/111+6000326..6001671expressed protein
LOC_Os01g11220OsAffx.9933.1.S1_at9/111+6001842..6003965expressed protein
LOC_Os01g11230Os.9306.1.S1_at11/111+6004660..6005829SOUL, putative, expressed
LOC_Os01g11240Os.12788.1.S1_at11/111+6007539..6008696expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9936.2.S1_at--386--9311Chr01:5987838..5987862 (25 bp)
TCCCTCTCTTGAAGACGGCTGGGTG
LOC_Os01g11170
OsAffx.9936.2.S1_at--89--9571Chr01:5987904..5987928 (25 bp)
TCTTAATCGTCTCACTCTTCTGCTC
LOC_Os01g11170
OsAffx.9936.2.S1_at--680--6611Chr01:5988426..5988450 (25 bp)
GATTGGCCCGGTGATAGGCCGCAAA
LOC_Os01g11170
OsAffx.9936.2.S1_at--553--2251Chr01:5988448..5988472 (25 bp)
AAATCGCCGTCGGTGGTAGACTGCG
LOC_Os01g11170
OsAffx.9936.2.S1_at--485--10531Chr01:5988484..5988508 (25 bp)
TTCAGACTTCAGACGACGACTTCAG
LOC_Os01g11170
OsAffx.9936.2.S1_at--1127--5772Chr01:5988495..5988519 (25 bp)
GACGACGACTTCAGACGACTTGCGA
LOC_Os01g11170
OsAffx.9936.2.S1_at--1157--10511Chr01:5988504..5988528 (25 bp)
TTCAGACGACTTGCGAGTGCGTGGC
LOC_Os01g11170
OsAffx.9936.2.S1_at--554--1871Chr01:5988533..5988557 (25 bp)
ACGAGTCCTGGTCGACGCTTGACGT
LOC_Os01g11170
OsAffx.9936.2.S1_at--364--5751Chr01:5988553..5988577 (25 bp)
GACGTCAAGAAATCTCGCTTGTGGA
LOC_Os01g11170
OsAffx.9936.2.S1_at--741--3611Chr01:5988570..5988594 (25 bp)
CTTGTGGAATTGTGGTGCTCTCGAC
LOC_Os01g11170
OsAffx.9936.2.S1_at--807--3171Chr01:5988577..5988601 (25 bp)
AATTGTGGTGCTCTCGACATAGGCC
LOC_Os01g11170
Target Sequence 
TCCCTCTCTTGAAGACGGCTGGGTGTCGAAGCCGCGGATGACGGCAGCGCGGGAGGCTCCTCTCCCTCTTAATCGTCTCA
CTCTTCTGCTCCGGATCAACCTCGAGCTGCTCTCCCTCGACCACCTCTCGGGGATTGGCCCGGTGATAGGCCGCAAATCG
CCGTCGGTGGTAGACTGCGGTGGCAGGGAGTTCAGACTTCAGACGACGACTTCAGACGACTTGCGAGTGCGTGGCTGGCA
CGAGTCCTGGTCGACGCTTGACGTCAAGAAATCTCGCTTGTGGAATTGTGGTGCTCTCGACATAGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9936.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis