Browse Element(s) Details


OsAffx.9986.1.S1_at

Description gb:NM_188097.1
DB_XREF= gi:34903277
TID=OsAffx.9986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g169804/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16940Os.24980.1.S1_at11/111+9681609..9686284Histidine biosynthesis bifunctional protein hisIE, chloroplast precursor, putative, expressed
LOC_Os01g16950Os.212.1.S1_at11/111+9687092..9688882Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16960Os.213.1.S1_at11/111+9690805..9696595Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os01g16970Os.6899.1.S2_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_a_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.2.S1_x_at10/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.29480.1.S1_s_at3/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.5663.1.S1_at1/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16980Os.54420.1.S1_x_at10/111+9708409..9709197expressed protein
LOC_Os01g16980Os.54420.1.S1_at10/111+9708409..9709197expressed protein
LOC_Os01g16980OsAffx.9986.1.S1_at4/111+9708409..9709197expressed protein
LOC_Os01g16990Os.51519.1.S1_at3/111+9724476..9725022expressed protein
LOC_Os01g17000Os.35540.1.S1_at11/111+9730610..9735004Dof domain, zinc finger family protein, expressed
LOC_Os01g17000Os.56959.1.S1_at1/111+9730610..9735004Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9986.1.S1_at--479--7871Chr01:9708982..9709006 (25 bp)
GGTTTGTACGGCTTGATCGAGCTCT
LOC_Os01g16980
OsAffx.9986.1.S1_at--1064--9911Chr01:9708976..9709000 (25 bp)
TACGGCTTGATCGAGCTCTTCGGCT
LOC_Os01g16980
OsAffx.9986.1.S1_at--1029--9591Chr01:9708921..9708945 (25 bp)
TCATCTTTGCCCTGTGTTTTCTCCT
LOC_Os01g16980
OsAffx.9986.1.S1_at--928--8771Chr01:9708907..9708931 (25 bp)
TGTTTTCTCCTCCTTGCAGCGGCGG
LOC_Os01g16980
OsAffx.9986.1.S1_at--497--651NONE
ATGCAGCAAACGCTCCATATGCCGT
NONE
OsAffx.9986.1.S1_at--336--4791Chr01:9706944..9706966 (23 bp)
GCTCCATATGCCGTCTATATCTTTT
NONE
OsAffx.9986.1.S1_at--669--4231Chr01:9706934..9706958 (25 bp)
CCGTCTATATCTTTTTGTCATGGCA
NONE
OsAffx.9986.1.S1_at--508--10151Chr01:9706927..9706951 (25 bp)
TATCTTTTTGTCATGGCAGCAGGAA
NONE
OsAffx.9986.1.S1_at--964--5031Chr01:9706912..9706936 (25 bp)
GCAGCAGGAAAGATTGCCAACTATG
NONE
OsAffx.9986.1.S1_at--1023--4391Chr01:9706897..9706921 (25 bp)
GCCAACTATGGAGCTCGCTTGTCCC
NONE
OsAffx.9986.1.S1_at--10--9431Chr01:9706864..9706888 (25 bp)
TCGTGCATCCGCCTTGGACACTACT
NONE
Target Sequence 
GGTTTGTACGGCTTGATCGAGCTCTTCGGCTCGCCGGAACTCTCGCCGGAGGCCATGCTCCTCATCTTTGCCCTGTGTTT
TCTCCTCCTTGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGACCACAACCACCACCAGCGTCGTCGGCTACCGGAGGG
CGCTGCTTCCCAGGGAGGCGGCGGCGGTGGTGATGCCGACGACGTCGACGGCGGAGGACGCGGCGGTGGTGGGGATGGCC
GGAGTAGAGGGAGAGCTGCCGGTCGTCGCCGACGAGGCGGCGGCGGCGGCGGCGAGGCGGATGGACATGCAGACGACGCA
GGACTACCCGAGCTCCGGCGCCAACAGCCGCCACGATCCGAGGAACCCGCATTGAGATTCGTGCAGGGAAGCTATCTATC
TACCGTTGATTCATGGGGTGGAGATGCATACGCCTACTTGTACAATACTACACATGCAGCAAACGCTCCATATGCCGTCT
ATATCTTTTTGTCATGGCAGCAGGAAAGATTGCCAACTATGGAGCTCGCTTGTCCCCCCCCCCCTCGTGCATCCGCCTTG
GACACTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis