Browse Element(s) Details


Os.10037.1.S1_at

Description gb:AK060418.1
DB_XREF= gi:32970436
TID=Os.10037.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10037 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-010-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F06, full insert sequence.
FL= gb:AK060418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4666011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46630Os.34191.1.S1_at11/117+27863332..27866538adenosine/AMP deaminase family protein, putative, expressed
LOC_Os07g46640Os.17163.1.S1_at10/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46640OsAffx.20501.1.S1_at1/117+27867221..27874787Glycosyl transferase family protein, expressed
LOC_Os07g46650OsAffx.1524.1.S1_at11/117+27877952..27880702transposon protein, putative, Mutator sub-class
LOC_Os07g46660Os.10037.1.S1_at11/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.6243.1.S1_at2/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46660Os.44608.1.S1_at1/117+27881884..27886545Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os07g46670Os.11719.1.S1_at11/117+27887725..27889622expressed protein
LOC_Os07g46670Os.11719.1.S2_at11/117+27887725..27889622expressed protein
LOC_Os07g46680OsAffx.28871.1.S1_at1/117+27898684..27899599hypothetical protein
LOC_Os07g46690Os.27554.1.S1_x_at11/117+27901272..27910515PHD-finger family protein, expressed
LOC_Os07g46690OsAffx.5653.1.S1_at11/117+27901272..27910515PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10037.1.S1_at--491--691Chr07:27886149..27886173 (25 bp)
ATGACCAAGCATATGTCCTGTTCTA
LOC_Os07g46660
Os.10037.1.S1_at--244--9931Chr07:27886202..27886226 (25 bp)
TACGGAGTTGATTAGCGGTTCTCTT
LOC_Os07g46660
Os.10037.1.S1_at--1147--4671Chr07:27886216..27886240 (25 bp)
GCGGTTCTCTTATTGCTTGAACAGC
LOC_Os07g46660
Os.10037.1.S1_at--899--531Chr07:27886259..27886283 (25 bp)
ATCGCCCAGTTAATGTAGCTGCCGT
LOC_Os07g46660
Os.10037.1.S1_at--193--6971Chr07:27886273..27886297 (25 bp)
GTAGCTGCCGTGTAACTGAGAATCT
LOC_Os07g46660
Os.10037.1.S1_at--79--7671Chr07:27886353..27886377 (25 bp)
GGGATTTTTGTTCAGGCCATTGTTG
LOC_Os07g46660
Os.10037.1.S1_at--262--6291Chr07:27886432..27886456 (25 bp)
GATGATATCACTCGTTAGCCCTAAG
LOC_Os07g46660
Os.10037.1.S1_at--1111--6771Chr07:27886445..27886469 (25 bp)
GTTAGCCCTAAGAAACTATATTGAT
LOC_Os07g46660
Os.10037.1.S1_at--772--51Chr07:27886464..27886488 (25 bp)
ATTGATCATGTTATTGCGGTGTTGC
LOC_Os07g46660
Os.10037.1.S1_at--1042--4671Chr07:27886479..27886503 (25 bp)
GCGGTGTTGCATTTGATTATATTAA
LOC_Os07g46660
Os.10037.1.S1_at--930--6551Chr07:27886509..27886533 (25 bp)
GATTAAAACGTCCAGCTTGTGAGCT
LOC_Os07g46660
Target Sequence 
ATGACCAAGCATATGTCCTGTTCTACAAACAATTATAAGTTTGGGGGTATTGCTACGGAGTTGATTAGCGGTTCTCTTAT
TGCTTGAACAGCTAGATATATACTAACTATATCGCCCAGTTAATGTAGCTGCCGTGTAACTGAGAATCTTGTGTCAAGTG
CCTGGTTTNNNNNGNNTTNNNTTNATATANGCTNTGATCACATAGTGGGGGATTTTTGTTCAGGCCATTGTTGAGGTTTT
GTAAAATGCAAATGTCATCTTGGTAATGNCCATTAAAGTAACCATGAGATGATATCACTCGTTAGCCCTAAGAAACTATA
TTGATCATGTTATTGCGGTGTTGCATTTGATTATATTAAAACGTGATTAAAACGTCCAGCTTGTGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10037.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis