Browse Element(s) Details


Os.1005.1.S1_at

Description gb:AF367205.1
DB_XREF= gi:17225988
TID=Os.1005.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.1005 (NCBI UniGene Cluster)
DEF=Oryza sativa 1-deoxy-D-xylulose 5-phosphate reductoisomerase precursor, mRNA, complete cds; nuclear gene for plastid product.
PROD=1-deoxy-D-xylulose 5-phosphate reductoisomeraseprecursor
FL= gb:AK059692.1 gb:AK099702.1 gb:AF367205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0171010/111-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01689Os.17083.1.S1_at10/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01689OsAffx.32329.1.S1_x_at1/111+332611..367993Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g01700Os.20521.1.S2_at8/111+368633..371215RING-box protein 1, putative, expressed
LOC_Os01g01710Os.1005.1.S1_at10/111+371530..3775181-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g01720Os.27278.1.S1_s_at11/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.27278.1.S1_at10/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01720Os.32421.1.A1_at9/111+379849..383448Peroxisomal membrane anchor protein conserved region containing protein, expressed
LOC_Os01g01730OsAffx.23038.1.S1_x_at11/111+386853..387425hypothetical protein
LOC_Os01g01730OsAffx.23038.1.S1_at11/111+386853..387425hypothetical protein
LOC_Os01g01740Os.23182.1.S1_at11/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01740Os.40425.1.A1_x_at10/111+388885..393453protein kinase, putative, expressed
LOC_Os01g01760OsAffx.22944.4.S1_at11/111+400494..401204hypothetical protein
LOC_Os01g01760OsAffx.22944.2.S1_s_at11/111+400494..401204hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0030604molecular_function1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1005.1.S1_at--1093--4491Chr01:373448..373469 (22 bp)
GCCCCGACTAGATCTTTGCAAGCTG
LOC_Os01g01710
Os.1005.1.S1_at--977--10731NONE
TTGCAAGCTGGGTTCACTGACATTC
NONE
Os.1005.1.S1_at--734--831Chr01:372878..372902 (25 bp)
ATGGATCTCGCCTATGCAGCTGGAA
LOC_Os01g01710
Os.1005.1.S1_at--950--5651Chr01:372837..372861 (25 bp)
GACAGGAGTTCTGAGTGCTGCTAAT
LOC_Os01g01710
Os.1005.1.S1_at--561--1611Chr01:371894..371918 (25 bp)
AGCTGACATGCGACGCTCATCGGAA
LOC_Os01g01710
Os.1005.1.S1_at--81--4631Chr01:371817..371841 (25 bp)
GCGAGGGAGTATGCTGCCAGCCTAC
LOC_Os01g01710
Os.1005.1.S1_at--108--4551Chr01:371774..371798 (25 bp)
GCCCTGTACCTGTCTAGTACTTGTA
LOC_Os01g01710
Os.1005.1.S1_at--64--6971Chr01:371733..371757 (25 bp)
GTAGCATTGTACACTACTGCCGTGC
LOC_Os01g01710
Os.1005.1.S1_at--29--7291Chr01:371712..371736 (25 bp)
GTGCCAGCTCCATGCATAGTCAGCA
LOC_Os01g01710
Os.1005.1.S1_at--487--8451Chr01:371685..371709 (25 bp)
TGGCCACTCTCTAGCTATATCTAGA
LOC_Os01g01710
Os.1005.1.S1_at--792--5231Chr01:371621..371645 (25 bp)
GAATAAATCGTTCGTCCGTGCGTTG
LOC_Os01g01710
Target Sequence 
GCCCCGACTAGATCTTTGCAAGCTGGGTTCACTGACATTCAAAGCTCCTGACAATGTGAAATACCCGTCGATGGATCTCG
CCTATGCAGCTGGAAGAGCTGGGGGCACCATGACAGGAGTTCTGAGTGCTGCTAATGAGAAGGCTGTGGAGTTGTTCATC
GATGAAAAGATCGGGTACCTGGACATNTTCAAGGTGGTGGAGCTGACATGCGACGCTCATCGGAATGAGCTAGTAACAAG
GCCATCACTGGAGGAGATCATACATTATGATCTGTGGGCGAGGGAGTATGCTGCCAGCCTACAGCCATCCACTGGCCTCA
GCCCTGTACCTGTCTAGTACTTGTAGCAATACAAAATTACAGTAGCATTGTACACTACTGCCGTGCCAGCTCCATGCATA
GTCAGCAGCTGGCCACTCTCTAGCTATATCTAGATGCGAGAGAATTTTAAGGATGTAAATCATGCCTTCACATGAATAAA
TCGTTCGTCCGTGCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis