Browse Element(s) Details


Os.10054.1.S1_at

Description gb:AK069300.1
DB_XREF= gi:32979324
TID=Os.10054.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023016A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023016A03, full insert sequence.
FL= gb:AK069300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g466505/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46620Os.51385.1.S1_at11/112+28448016..28449039expressed protein
LOC_Os02g46630OsAffx.22940.2.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.1.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.18.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_x_at7/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_at6/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.2.S1_at4/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.31552.2.S1_at1/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46640Os.18397.1.S1_at11/112+28458867..28461493Chaperone protein dnaJ, putative, expressed
LOC_Os02g46650Os.10054.1.S1_at5/112+28466956..28472140Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g46660Os.7663.1.S1_at11/112+28472750..28475487Gtk16 protein, putative, expressed
LOC_Os02g46670OsAffx.24756.1.S1_at11/112+28477174..28478268hypothetical protein
LOC_Os02g46680Os.31907.1.S1_x_at11/112+28481686..28492751P-glycoprotein, putative, expressed
LOC_Os02g46680OsAffx.25903.3.S1_at1/112+28481686..28492751P-glycoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10054.1.S1_at--374--9531Chr02:28471949..28471973 (25 bp)
TCTAAATCGACGAAGGGCCCTTGCA
LOC_Os02g46650
Os.10054.1.S1_at--956--31Chr02:28472030..28472054 (25 bp)
ATTGTGGACTGCTTGAGCCAACTCA
LOC_Os02g46650
Os.10054.1.S1_at--237--111Chr02:28472067..28472091 (25 bp)
ATTCTGGAAGCTGTCCTCGGAGTCA
LOC_Os02g46650
Os.10054.1.S1_at--10--3791Chr02:28472082..28472106 (25 bp)
CTCGGAGTCACCCTCTTGGCAAAAA
LOC_Os02g46650
Os.10054.1.S1_at--154--3951Chr02:28472113..28472137 (25 bp)
CGGCATCCCGGTTCCAATCAAATGG
LOC_Os02g46650
Os.10054.1.S1_at--869--811Chr02:28472134..28472158 (25 bp)
ATGGTAGCATGGTCCGAGTGCCGAA
NONE
Os.10054.1.S1_at--963--10351Chr02:28472166..28472190 (25 bp)
TTTTTCCAGCTGTACATGTTAGTTT
NONE
Os.10054.1.S1_at--491--351Chr02:28472241..28472265 (25 bp)
ATAACCTGTATGACCGGCTAGATGG
NONE
Os.10054.1.S1_at--1109--9871Chr02:28472277..28472301 (25 bp)
TACATTTTTGCTGCCTTCTGATGTG
NONE
Os.10054.1.S1_at--904--10091Chr02:28472320..28472344 (25 bp)
TATGGAACATGCACTCGGAGTCCCA
NONE
Os.10054.1.S1_at--810--3951Chr02:28472335..28472359 (25 bp)
CGGAGTCCCACTTCATTTGTGAAAA
NONE
Target Sequence 
TCTAAATCGACGAAGGGCCCTTGCATAGATAAGAACGTAACACGATTAGTAAGGAGTATNCCGTCCACTCGGAGAAAAGG
CATTGTGGACTGCTTGAGCCAACTCAATGCAGAGCAGGATTCTGGAAGCTGTCCTCGGAGTCACCCTCTTGGCAAAAAGA
AGCTCGGCATCCCGGTTCCAATCAAATGGTAGCATGGTCCGAGTGCCGAAGCCTTTTTTTTTCCAGCTGTACATGTTAGT
TTAGCATGCATTTTGTTTTATATCCAGAACCNACAAATTTTATNTGCTTGTCATAACCTGTATGACCGGCTAGATGGTGA
TAGTGAGGTACATTTTTGCTGCCTTCTGATGTGNAATGCCTCACCTATATGTATGGAACATGCACTCGGAGTCCCACTTC
ATTTGTGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis