Browse Element(s) Details


Os.10080.1.S1_at

Description gb:AK065876.1
DB_XREF= gi:32975894
TID=Os.10080.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047J07, full insert sequence.
FL= gb:AK065876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0307010/11shrunken seed protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03030OsAffx.24077.1.S1_at10/112+1190846..1192461PHD finger family protein, putative
LOC_Os02g03040Os.14104.1.A1_a_at11/112+1193388..1197056Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os02g03050OsAffx.24078.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03050Os.49378.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03060Os.51694.1.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.2.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.1.S1_x_at10/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03070Os.10080.1.S1_at10/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03070OsAffx.30891.1.S1_at1/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03080Os.48733.1.A1_at9/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03080Os.48081.1.S1_at1/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03090OsAffx.24079.1.S1_at11/112+1223725..1226826expressed protein
LOC_Os02g03100Os.5272.1.S1_at11/112+1227321..1230217NADP-dependent D-sorbitol-6-phosphate dehydrogenase, putative, expressed
LOC_Os02g03110Os.18465.1.S1_at11/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03110Os.18465.2.S1_x_at9/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03120Os.54770.1.S1_at10/112+1237099..1240160Endoglucanase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007031biological_processperoxisome organization and biogenesis
GO:0005777cellular_componentperoxisome
GO:0005789cellular_componentendoplasmic reticulum membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10080.1.S1_at--944--6011Chr02:1217261..1217285 (25 bp)
GAGAGATCCATTCTTTACCAGATAC
LOC_Os02g03070
Os.10080.1.S1_at--473--2671NONE
AAGCGCCATCTCCAGAAGGCTGAGA
NONE
Os.10080.1.S1_at--842--5571Chr02:1217398..1217422 (25 bp)
GAAAGTGTTGGATCCAGTGCCTCTT
LOC_Os02g03070
Os.10080.1.S1_at--710--1131Chr02:1217413..1217437 (25 bp)
AGTGCCTCTTATTGGTTTCCTTACA
LOC_Os02g03070
Os.10080.1.S1_at--177--6511Chr02:1217573..1217597 (25 bp)
GATATACATACACATCGGGCTCATA
LOC_Os02g03070
Os.10080.1.S1_at--649--6011Chr02:1217631..1217655 (25 bp)
GAGAGTTTCCTTAACGATTTGCCAT
LOC_Os02g03070
Os.10080.1.S1_at--67--571Chr02:1217710..1217734 (25 bp)
ATCCTAATCCTATCTGTACATGCCA
LOC_Os02g03070
Os.10080.1.S1_at--347--7031Chr02:1217725..1217749 (25 bp)
GTACATGCCATTTCCTTAGCAAGAT
LOC_Os02g03070
Os.10080.1.S1_at--254--1271Chr02:1217746..1217770 (25 bp)
AGATTTGGCATTCCTACCTGATGTC
LOC_Os02g03070
Os.10080.1.S1_at--821--2731Chr02:1217873..1217897 (25 bp)
AAGAATAGGCACATCATCCCTGCAA
LOC_Os02g03070
Os.10080.1.S1_at--1125--531Chr02:1217888..1217912 (25 bp)
ATCCCTGCAACGATACCGTGTATTT
LOC_Os02g03070
Target Sequence 
GAGAGATCCATTCTTTACCAGATACACCNAAGCGCCATCTCCAGAAGGCTGAGAAAGTGTTGGATCCAGTGCCTCTTATT
GGTTTCCTTACAGGCAAACTCGTAGAGCTAGTGGAGGGGGCTCAGACACGATATACATACACATCGGGCTCATAAGGATA
ATGGACAAGCAGGCAGATGTCATGTCTGAGAGTTTCCTTAACGATTTGCCATGATTAACCTTTTGTGGTTCATGTGATCT
GGTTGATGGGTTTTGTTTTGAGCTTGATCCTAATCCTATCTGTACATGCCATTTCCTTAGCAAGATTTGGCATTCCTACC
TGATGTCTTGGGGCTGCAAAGCTGTTGCGGCCACTGTAAACTCTCCTCTCTCCTCTGGTGGCAGCTCAGCTGAGAATCTA
ACTATACTATAGTATATCGGTGTAATATTAAGAATAGGCACATCATCCCTGCAACGATACCGTGTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis