Browse Element(s) Details


Os.10087.1.S1_at

Description gb:AK062641.1
DB_XREF= gi:32972659
TID=Os.10087.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D09, full insert sequence.
FL= gb:AK062641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5128011/11DAG protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51230NANA4+30131899..30138054retrotransposon protein, putative, unclassified
LOC_Os04g51240Os.5617.1.S1_at11/114+30142907..30144569EF hand family protein, expressed
LOC_Os04g51250OsAffx.14363.1.S1_at11/114+30146904..30149773expressed protein
LOC_Os04g51260OsAffx.4145.2.S1_x_at11/114+30152720..30155227hypothetical protein
LOC_Os04g51260OsAffx.4145.1.S1_x_at1/114+30152720..30155227hypothetical protein
LOC_Os04g51270Os.4737.1.S1_at10/114+30155605..30157993Vacuolar ATP synthase subunit G 2, putative, expressed
LOC_Os04g51280Os.10087.1.S1_at11/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51280OsAffx.4145.1.S1_x_at5/114+30158201..30160450DAG protein, chloroplast precursor, putative, expressed
LOC_Os04g51290OsAffx.4145.1.S1_x_at11/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.1.S1_at10/114+30161460..30165649expressed protein
LOC_Os04g51290OsAffx.4145.2.S1_x_at3/114+30161460..30165649expressed protein
LOC_Os04g51300Os.17232.1.S2_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51300Os.17232.1.S1_at11/114+30166444..30169255L-ascorbate peroxidase, chloroplast precursor, putative, expressed
LOC_Os04g51310Os.27519.1.S1_at11/114+30169340..30171639putrescine-binding periplasmic protein, putative, expressed
LOC_Os04g51320OsAffx.14364.1.S1_s_at11/114+30174422..30176697transcription factor GT-3b, putative, expressed
LOC_Os04g51330Os.24793.1.A1_at11/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.46481.2.S1_x_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330Os.10838.3.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os04g51330OsAffx.28164.2.S1_at1/114+30177873..30182855Maltose excess protein 1-like, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10087.1.S1_at--113--1911Chr04:30158742..30158766 (25 bp)
ACGTGTCATGCGAACGGTACTTTGG
LOC_Os04g51280
Os.10087.1.S1_at--495--3671Chr04:30158761..30158785 (25 bp)
CTTTGGGTTCGGTTGCGAGATTGAC
LOC_Os04g51280
Os.10087.1.S1_at--217--8151Chr04:30159544..30159565 (22 bp)
GGAAGGGCTACCAGGTGTTCTATTT
LOC_Os04g51280
Os.10087.1.S1_at--537--6971Chr04:30160231..30160255 (25 bp)
GTACCAGCGGTGAAGGCTCACCTTA
LOC_Os04g51280
Os.10087.1.S1_at--403--9671Chr04:30160248..30160272 (25 bp)
TCACCTTACCTGCAACTGGCTAGAT
LOC_Os04g51280
Os.10087.1.S1_at--473--2571Chr04:30160261..30160285 (25 bp)
AACTGGCTAGATGCATCGACTCCTG
LOC_Os04g51280
Os.10087.1.S1_at--261--532Chr04:30165681..30165705 (25 bp)
ATCGACTCCTGCGTTTAGAACAGCA
NONE
Os.10087.1.S1_at--755--1591Chr04:30160299..30160323 (25 bp)
AGCTCCTGCACGAGAAATGCCTTAG
LOC_Os04g51280
Os.10087.1.S1_at--659--10451Chr04:30160320..30160344 (25 bp)
TTAGATTTTTTGTATGCTGCTGCTG
LOC_Os04g51280
Os.10087.1.S1_at--316--3912Chr04:30160351..30160375 (25 bp)
CTGGTAATGTTTTATGCATCTGGGC
LOC_Os04g51280
Os.10087.1.S1_at--625--7591Chr04:30160372..30160396 (25 bp)
GGGCATGTATGTTTTGTCTACTTCA
LOC_Os04g51280
Target Sequence 
ACGTGTCATGCGAACGGTACTTTGGGTTCGGTTGCGAGATTGACGAGGAAACATCCAACAAGCTGGAAGGGCTACCAGGT
GTTCTATTTGTGCTTCCTGATTCCTATGTTGATGCNGAGAACAAGGACTATGGCGCTGAGTTGTTTGTAAACGGAGAAAT
TGTTCAAAGATCACCAGAAAGGCAGAGAAGGGTGGAGCCAGTTCCTCAGAGAGCACAAGATAGACCCCGGTACAGTGACC
GAACTCGCTATGTGAAGCGGAGGGAGAATCAGGCGTACCAGCGGTGAAGGCTCACCTTACCTGCAACTGGCTAGATGCAT
CGACTCCTGCGTTTAGAACAGCAGCTCCTGCACGAGAAATGCCTTAGATTTTTTGTATGCTGCTGCTGTGTAATCTGGTA
ATGTTTTATGCATCTGGGCATGTATGTTTTGTCTACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis