Browse Element(s) Details


Os.10116.1.S1_at

Description gb:AK063815.1
DB_XREF= gi:32973833
TID=Os.10116.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.10116 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-H05, full insert sequence.
FL= gb:AK063815.1 gb:AK121516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g081801/11Protein transport protein SEC61 gamma subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08130Os.27561.1.S1_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08130Os.27561.1.S2_at11/112+4302087..4309652ribitol kinase, putative, expressed
LOC_Os02g08140Os.49797.1.A1_at11/112+4306571..4309936Protein kinase domain containing protein, expressed
LOC_Os02g08150Os.13999.1.S1_at11/112+4315280..4316957CONSTANS-like protein CO7, putative, expressed
LOC_Os02g08160OsAffx.11937.1.S1_at11/112+4320543..4323883F-box domain containing protein, expressed
LOC_Os02g08170OsAffx.11938.1.S1_at2/112+4326072..4326885hypothetical protein
LOC_Os02g08170OsAffx.11938.1.S1_x_at1/112+4326072..4326885hypothetical protein
LOC_Os02g08180Os.10116.1.S1_at1/112+4332352..4332667Protein transport protein SEC61 gamma subunit, putative, expressed
LOC_Os02g08190Os.6022.1.S1_at10/112+4334607..4338099Protein CYPRO4, putative, expressed
LOC_Os02g08200NANA2+4341772..4342164Zinc finger, C3HC4 type family protein
LOC_Os02g08210OsAffx.24163.1.S1_at9/112+4346840..4350247hypothetical protein
LOC_Os02g08220Os.15780.1.S1_at11/112+4350869..4351990expressed protein
LOC_Os02g08230Os.4769.1.S1_at11/112+4355059..4362385Gl1 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006605biological_processprotein targeting
GO:0006886biological_processintracellular protein transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10116.1.S1_at--311--3271Chr02:4332643..4332667 (25 bp)
CAACATCATCGTCGGATCCGGCTGA
LOC_Os02g08180
Os.10116.1.S1_at--88--3971Chr02:4332655..4332679 (25 bp)
CGGATCCGGCTGATTTGAGCACTAA
NONE
Os.10116.1.S1_at--365--6651Chr02:4334147..4334171 (25 bp)
GTTGAGGGTGGCGTCAAACATCGCA
NONE
Os.10116.1.S1_at--853--2391Chr02:4334162..4334186 (25 bp)
AAACATCGCAGAGACGGCTCCACTT
NONE
Os.10116.1.S1_at--39--10571Chr02:4334185..4334209 (25 bp)
TTCTCCGTTCCTGATGATTTCGTAA
NONE
Os.10116.1.S1_at--666--2731Chr02:4334209..4334233 (25 bp)
AAGCAATCTCTGTAGGACCTTGTTG
NONE
Os.10116.1.S1_at--332--8811Chr02:4334232..4334256 (25 bp)
TGTTGAGTACAATTCCCCATTTCTT
NONE
Os.10116.1.S1_at--533--2211Chr02:4334240..4334264 (25 bp)
ACAATTCCCCATTTCTTTCATTTGA
NONE
Os.10116.1.S1_at--230--331Chr02:4334275..4334299 (25 bp)
ATACATTTTGCTGCCTGGAACGTTT
NONE
Os.10116.1.S1_at--196--4471Chr02:4334287..4334311 (25 bp)
GCCTGGAACGTTTTGTACCTGATAC
NONE
Os.10116.1.S1_at--166--6971Chr02:4334301..4334325 (25 bp)
GTACCTGATACCGAGTAAACTTTAT
NONE
Target Sequence 
CAACATCATCGTCGGATCCGGCTGATTTGAGCACTAAGGCAAGAATTCGCAGGAGTTGAGGGTGGCGTCAAACATCGCAG
AGACGGCTCCACTTCTCCGTTCCTGATGATTTCGTAAAGCAATCTCTGTAGGACCTTGTTGTTGAGTACAATTCCCCATT
TCTTTCATTTGAAAGAAACAAAATACATTTTGCTGCCTGGAACGTTTTGTACCTGATACCGAGTAAACTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis