Browse Element(s) Details


Os.10129.1.S1_at

Description gb:AK104254.1
DB_XREF= gi:32989463
TID=Os.10129.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 26688 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C07, full insert sequence.
FL= gb:AK104546.1 gb:AK104634.1 gb:AK060872.1 gb:AK104254.1 gb:AK065082.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0154011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01500Os.5883.1.S1_at11/114+337148..338134expressed protein
LOC_Os04g01500Os.37016.2.S1_x_at1/114+337148..338134expressed protein
LOC_Os04g01510Os.9305.2.S1_x_at11/114+344567..346003AGR_C_3597p, putative, expressed
LOC_Os04g01510Os.9305.1.S1_at11/114+344567..346003AGR_C_3597p, putative, expressed
LOC_Os04g01520Os.27708.1.S1_at11/114+348134..350988expressed protein
LOC_Os04g01530Os.12284.1.S1_at3/114+354853..357900Adenylate kinase, putative, expressed
LOC_Os04g01540Os.10129.1.S1_at11/114+361312..362957expressed protein
LOC_Os04g01550OsAffx.13611.1.S1_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01550OsAffx.13611.1.S1_x_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01560OsAffx.25822.1.S1_at11/114+372485..374831expressed protein
LOC_Os04g01570Os.28801.1.S1_at10/114+376759..377523pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g01580OsAffx.3695.1.S1_x_at11/114+381388..381840hypothetical protein
LOC_Os04g01590Os.25208.1.S1_at11/114+387039..391434Arginase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10129.1.S1_at--905--6451Chr04:362312..362336 (25 bp)
GATCAAGTTCTCAATCACCCGAACA
LOC_Os04g01540
Os.10129.1.S1_at--188--3011Chr04:361993..362017 (25 bp)
AATGACCTTGTCAGCGCGAAAGAAC
LOC_Os04g01540
Os.10129.1.S1_at--490--5451Chr04:361972..361996 (25 bp)
GAACGCCTCACAAAGATCCTGCAAT
LOC_Os04g01540
Os.10129.1.S1_at--253--8211Chr04:361810..361834 (25 bp)
GGAATGAGCTCAACATGTCCATACT
LOC_Os04g01540
Os.10129.1.S1_at--1160--7251Chr04:361794..361818 (25 bp)
GTCCATACTAACACTCCTCGATGAA
LOC_Os04g01540
Os.10129.1.S1_at--643--291Chr04:361766..361790 (25 bp)
ATAGCAAGCGCCAAGACCAACAATC
LOC_Os04g01540
Os.10129.1.S1_at--1125--831Chr04:361601..361625 (25 bp)
ATGGAGAATGTTCGCTCATCCATCC
LOC_Os04g01540
Os.10129.1.S1_at--1002--911Chr04:361549..361573 (25 bp)
AGGCATGTGGACTTAGCCCTGTCAC
LOC_Os04g01540
Os.10129.1.S1_at--207--1671Chr04:361535..361559 (25 bp)
AGCCCTGTCACATGGTTATCAAAAT
LOC_Os04g01540
Os.10129.1.S1_at--1154--7691Chr04:361466..361490 (25 bp)
GGGTCTGATTATGTTTCTCTCTTGT
LOC_Os04g01540
Os.10129.1.S1_at--1102--7411Chr04:361430..361454 (25 bp)
GTGTTCCATATATGCTCATGTCAGT
LOC_Os04g01540
Target Sequence 
GATCAAGTTCTCAATCACCCGAACAGCGGAAATGGAGGACCGATTGATCGAGTTGGAAGCGATGCAAAAGGTTCTGCTTG
AGGGAGTGGAGGCCTATGACAAGTTGCAAAATGACCTTGTCAGCGCGAAAGAACGCCTCACAAAGATCCTGCAATCAAGC
GACAAAAAATCGACACTTCTTGAAATGGTTGAACGGAATGAGCTCAACATGTCCATACTAACACTCCTCGATGAAAATAT
AGCAAGCGCCAAGACCAACAATCAGGAAGAAGCTGTGGCTTTCATGGAGAATGTTCGCTCATCCATCCTGAAATATATTA
CAGTATGAAATTGGTAGGCATGTGGACTTAGCCCTGTCACATGGTTATCAAAATTAGGTCATGAACCTGTAATTTGCAAG
GACATGTCACATATTCAAGGGTCTGATTATGTTTCTCTCTTGTATTTAGTTATTGTGTTCCATATATGCTCATGTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis