Browse Element(s) Details


Os.10159.1.S1_at

Description gb:AK067164.1
DB_XREF= gi:32977182
TID=Os.10159.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013094N20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013094N20, full insert sequence.
FL= gb:AK067164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6270011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62650Os.25061.1.S1_at11/113+35392356..35399319Ion channel DMI1-like, chloroplast precursor, putative, expressed
LOC_Os03g62660Os.10899.1.S1_at11/113+35401110..35405320transposon protein, putative, unclassified, expressed
LOC_Os03g62670Os.27628.2.S1_a_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62670Os.27628.1.S1_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62680Os.49395.1.S1_at7/113+35409217..35412888glycohydrolase family protein, expressed
LOC_Os03g62690Os.50857.1.S2_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62690Os.50857.1.S1_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62700Os.10159.1.S1_at11/113+35419520..35425280Protein kinase domain containing protein, expressed
LOC_Os03g62710NANA3+35427237..35428889BED zinc finger family protein
LOC_Os03g62720Os.40400.1.S1_at11/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62720Os.47354.1.A1_at1/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62730Os.8707.1.S1_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62730Os.8707.1.S2_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62740Os.8707.3.S1_x_at11/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62740Os.8707.2.A1_at9/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62750OsAffx.25798.1.S1_at11/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62750Os.8356.1.S1_at1/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10159.1.S1_at--187--8231Chr03:35420036..35420060 (25 bp)
GGCAGCTCTTTGTGTCCAATACGAA
LOC_Os03g62700
Os.10159.1.S1_at--1096--311Chr03:35420018..35420042 (25 bp)
ATACGAAGCAGAGTTCAGGCCCAAC
LOC_Os03g62700
Os.10159.1.S1_at--259--1551Chr03:35419990..35420014 (25 bp)
AGCATTGTTGTCAAGGCGCTCTCTC
LOC_Os03g62700
Os.10159.1.S1_at--82--6291Chr03:35419900..35419924 (25 bp)
GATGTTAGCTCATGGTAGACCTCCC
LOC_Os03g62700
Os.10159.1.S1_at--506--8231Chr03:35419875..35419899 (25 bp)
GGCACATGCCAGTTCGTAATCAGCG
LOC_Os03g62700
Os.10159.1.S1_at--386--3391Chr03:35419855..35419879 (25 bp)
CAGCGCATTCTGTGTGTAATTGCAA
LOC_Os03g62700
Os.10159.1.S1_at--1120--5031Chr03:35419790..35419814 (25 bp)
GCAGATCACATGGATTTCTCTTTGC
LOC_Os03g62700
Os.10159.1.S1_at--30--9551Chr03:35419772..35419796 (25 bp)
TCTTTGCCTTTTGTTGCTACCTTAG
LOC_Os03g62700
Os.10159.1.S1_at--721--10391Chr03:35419685..35419709 (25 bp)
TTTTCCACAGCTTCACTTCAGAGGT
LOC_Os03g62700
Os.10159.1.S1_at--329--311Chr03:35419655..35419679 (25 bp)
ATACTCCAGACATCGTTTGAACTTT
LOC_Os03g62700
Os.10159.1.S1_at--1063--10091Chr03:35419602..35419626 (25 bp)
TATGTGGCTGCGACAATCTTTGATG
LOC_Os03g62700
Target Sequence 
GGCAGCTCTTTGTGTCCAATACGAAGCAGAGTTCAGGCCCAACATGAGCATTGTTGTCAAGGCGCTCTCTCCTCTGCTTC
AACAAAAACCAGCAGTGCCAGCTGCCTCAGAGCCGGCGCCAGCAACTGAGAATTAAGATGTTAGCTCATGGTAGACCTCC
CGGCACATGCCAGTTCGTAATCAGCGCATTCTGTGTGTAATTGCAATTGGTTTAAGAAGTTTCTTTTGTGGGGTTCTCTG
TTGGATGCAGATCACATGGATTTCTCTTTGCCTTTTGTTGCTACCTTAGGTTTGCGGTTTGAGATTTGTGCTGTACATTG
GTCTGTAGGTGCAANGAATACTGCTTCCTCTCTTTTCCACAGCTTCACTTCAGAGGTGTCAAATACTCCAGACATCGTTT
GAACTTTCAATAGATGCAACATGTTCTGAATTTCATATGTGGCTGCGACAATCTTTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis