Browse Element(s) Details


Os.10179.1.S1_at

Description gb:AK065197.1
DB_XREF= gi:32975215
TID=Os.10179.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10179 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU082174(S13676),AU032395(R3986) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana hypothetical protein (AF049236) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002E17, full insert sequence.
FL= gb:AK065197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0364011/11BAG domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03600Os.4459.2.S1_x_at11/116+1388083..1394802transcriptional co-regulator family protein, putative, expressed
LOC_Os06g03610Os.44814.2.S1_at5/116+1397432..1399969protein kinase family protein, putative
LOC_Os06g03620NANA6+1400862..1401152hypothetical protein
LOC_Os06g03630OsAffx.15248.1.S1_s_at11/116+1404688..1405608hypothetical protein
LOC_Os06g03630OsAffx.15248.1.S1_at11/116+1404688..1405608hypothetical protein
LOC_Os06g03640Os.10179.1.S1_at11/116+1413222..1415364BAG domain-containing protein, putative, expressed
LOC_Os06g03650NANA6+1420577..1420819expressed protein
LOC_Os06g03660Os.4462.1.S1_a_at11/116+1422798..1426674Peroxisomal membrane protein PEX11-1, putative, expressed
LOC_Os06g03670OsAffx.27442.1.S1_at11/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03670Os.4463.1.S1_s_at11/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03670Os.57517.1.S1_x_at1/116+1433743..1434837AP2 domain containing protein, expressed
LOC_Os06g03676OsAffx.27443.1.S1_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03676OsAffx.27443.1.S1_x_at11/116+1437382..1444140SET domain-containing protein, putative, expressed
LOC_Os06g03676Os.44812.1.S1_at11/116+1437382..1444140SET domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006915biological_processapoptosis
GO:0042981biological_processregulation of apoptosis
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10179.1.S1_at--517--5731Chr06:1414787..1414811 (25 bp)
GACTGGATGCTATTCTGAGCACACA
LOC_Os06g03640
Os.10179.1.S1_at--180--5951Chr06:1414803..1414827 (25 bp)
GAGCACACACATCACAGAATCGGCA
LOC_Os06g03640
Os.10179.1.S1_at--495--1471Chr06:1414854..1414878 (25 bp)
AGAATTGCACCCATGTCCGGAAAAT
LOC_Os06g03640
Os.10179.1.S1_at--812--8151Chr06:1414872..1414896 (25 bp)
GGAAAATCCGAGGTGTCCTGTCCCT
LOC_Os06g03640
Os.10179.1.S1_at--855--7451Chr06:1414884..1414908 (25 bp)
GTGTCCTGTCCCTGATGAGATGATG
LOC_Os06g03640
Os.10179.1.S1_at--252--3171Chr06:1414925..1414949 (25 bp)
AATTGCCCTGGATTATTTGCTGCTG
LOC_Os06g03640
Os.10179.1.S1_at--376--9111Chr06:1414945..1414969 (25 bp)
TGCTGCTCTAGCAATTTGGTTGGCC
LOC_Os06g03640
Os.10179.1.S1_at--900--7911Chr06:1414962..1414986 (25 bp)
GGTTGGCCACATTACATGGTACTAC
LOC_Os06g03640
Os.10179.1.S1_at--838--8571Chr06:1414978..1415002 (25 bp)
TGGTACTACTACCACTTCTAGATGA
LOC_Os06g03640
Os.10179.1.S1_at--653--10231Chr06:1415213..1415237 (25 bp)
TATTGTTCTCCAATTGGCGTTTGAA
LOC_Os06g03640
Os.10179.1.S1_at--216--4431Chr06:1415310..1415334 (25 bp)
GCCATGGACTTGGACTGTGGATGAT
LOC_Os06g03640
Target Sequence 
GACTGGATGCTATTCTGAGCACACACATCACAGAATCGGCAGATGCAATGGTGGTGCTTGGTTGGCAAGAATTGCACCCA
TGTCCGGAAAATCCGAGGTGTCCTGTCCCTGATGAGATGATGATGAAGATGATGATTGAATTGCCCTGGATTATTTGCTG
CTGCTCTAGCAATTTGGTTGGCCACATTACATGGTACTACTACCACTTCTAGATGAGTTCAGTTCATCATGTGAGAGTAA
TTTTTTTTTNAATTTTGTTTTTTCTTTCTTTCTTTCTTTCTTCTTCTTCTTCACCATCAAATGTTTGATATTCTTTTGTG
TGCATATATTCTGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGGAAATTAGGGGGGAAGAGAGAAATTGAAGTGTATTCA
GATTGGGAATAAGTCAAAAAGGGTTATTATTGTTCTCCAATTGGCGTTTGAAGAAAAGGCAAAGAAAATGTTGTACCCAT
ATGGATACAGATACCAATACATACCGTTCTTGATAAGGGGAGAGGCCATGGACTTGGACTGTGGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10179.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis