Browse Element(s) Details


Os.10259.1.S1_at

Description gb:AK102426.1
DB_XREF= gi:32987635
TID=Os.10259.1
CNT=58
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10259 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093F17, full insert sequence.
FL= gb:AK102426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3914011/11Heat shock protein 82, putative, expressed
LOC_Os09g087301/11Pumilio-family RNA binding repeat containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39080Os.28195.1.S1_a_at11/118+24552443..24561690peroxisomal targeting signal 1 receptor, putative, expressed
LOC_Os08g39090Os.5444.1.S1_at11/118+24562844..24566056expressed protein
LOC_Os08g39090Os.5444.1.S2_at11/118+24562844..24566056expressed protein
LOC_Os08g39100Os.47314.1.S1_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39100Os.47314.1.S2_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39120Os.6010.1.S1_at11/118+24579715..24582800expressed protein
LOC_Os08g39130Os.54338.1.S1_at11/118+24583470..24585283pentatricopeptide, putative, expressed
LOC_Os08g39140Os.10259.1.S1_at11/118+24586306..24590700Heat shock protein 82, putative, expressed
LOC_Os08g39150Os.26955.1.S1_at7/118+24594105..24598380expressed protein
LOC_Os08g39160Os.49426.1.S1_at11/118+24598749..24601260Phosphoribosylglycinamide formyltransferase, chloroplast precursor, putative, expressed
LOC_Os08g39170OsAffx.6080.1.S1_at11/118+24602067..24605518Protein kinase domain containing protein
LOC_Os08g39180Os.27559.1.S1_at1/118+24608961..24625646retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009704biological_processde-etiolation
GO:0010157biological_processresponse to chlorate
GO:0046685biological_processresponse to arsenic
GO:0005739cellular_componentmitochondrion
GO:0009570cellular_componentchloroplast stroma
GO:0003723molecular_functionRNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10259.1.S1_at--739--10631Chr08:24586541..24586565 (25 bp)
TTCGCAGCGAAAGTACACCATGGAG
LOC_Os08g39140
Os.10259.1.S1_at--497--8071Chr08:24586520..24586544 (25 bp)
GGAGCATTGGAGCTAGCTTATCTGT
LOC_Os08g39140
Os.10259.1.S1_at--407--8051Chr08:24586512..24586536 (25 bp)
GGAGCTAGCTTATCTGTTTTACCTT
LOC_Os08g39140
Os.10259.1.S1_at--940--6551Chr08:24586497..24586521 (25 bp)
GTTTTACCTTTTGAACATCGCGTTG
LOC_Os08g39140
Os.10259.1.S1_at--253--2511Chr08:24586484..24586508 (25 bp)
AACATCGCGTTGTTGGGTCGGTTCG
LOC_Os08g39140
Os.10259.1.S1_at--439--7191Chr08:24586468..24586492 (25 bp)
GTCGGTTCGGTTTATTTTGTGCGAT
LOC_Os08g39140
Os.10259.1.S1_at--457--10251Chr08:24586453..24586477 (25 bp)
TTTGTGCGATTTGCTTTACCTTTAC
LOC_Os08g39140
Os.10259.1.S1_at--373--10472Chr09:4600812..4600831 (20 bp)
TTACCTTTACCTAGCCTGCAATGCA
LOC_Os09g08730
Os.10259.1.S1_at--161--7591Chr08:24586411..24586435 (25 bp)
GGGCTAGATTGTGCTATGGGTTCTC
LOC_Os08g39140
Os.10259.1.S1_at--41--3711Chr08:24586398..24586422 (25 bp)
CTATGGGTTCTCGAACTGCGTACGT
LOC_Os08g39140
Os.10259.1.S1_at--332--1991Chr08:24586384..24586408 (25 bp)
ACTGCGTACGTTAATTATATTGCTA
LOC_Os08g39140
Target Sequence 
TTCGCAGCGAAAGTACACCATGGAGCATTGGAGCTAGCTTATCTGTTTTACCTTTTGAACATCGCGTTGTTGGGTCGGTT
CGGTTTATTTTGTGCGATTTGCTTTACCTTTACCTAGCCTGCAATGCATGGGGCTAGATTGTGCTATGGGTTCTCGAACT
GCGTACGTTAATTATATTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis