Browse Element(s) Details


Os.10271.2.S1_x_at

Description gb:NM_187983.1
DB_XREF= gi:34903049
TID=Os.10271.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1586011/11PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os10g355504/11U5 snRNP-associated 102 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15819OsAffx.1328.1.S1_at4/111+8912276..8912899NA
LOC_Os01g15830Os.1153.1.S1_at11/111+8914558..8916770Peroxidase 72 precursor, putative, expressed
LOC_Os01g15840OsAffx.11067.1.S1_at11/111+8918392..8922174cytochrome P450 71B10, putative
LOC_Os01g15850OsAffx.23264.1.S1_s_at11/111+8923487..8926157expressed protein
LOC_Os01g15850Os.54158.1.S1_at1/111+8923487..8926157expressed protein
LOC_Os01g15860Os.10271.2.S1_x_at11/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15860Os.10271.1.S1_x_at1/111+8928395..8933469PRP1 splicing factor, N-terminal family protein, expressed
LOC_Os01g15880NANA1+8936150..8939415retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15890Os.45882.1.A1_at9/111+8940698..8945227retrotransposon protein, putative, unclassified, expressed
LOC_Os01g15900Os.11786.2.S1_x_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.2.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15900Os.11786.1.S1_at11/111+8946080..8949429Dof domain, zinc finger family protein, expressed
LOC_Os01g15910OsAffx.11069.1.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.4.S1_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein
LOC_Os01g15910OsAffx.11069.1.S1_x_at11/111+8955213..8964009UTP-glucose-1-phosphate uridylyltransferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0006445biological_processregulation of translation
GO:0009657biological_processplastid organization and biogenesis
GO:0005622cellular_componentintracellular
GO:0009941cellular_componentchloroplast envelope
GO:0004565molecular_functionbeta-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10271.2.S1_x_at--851--851Chr01:8930626..8930650 (25 bp)
ATGGCTTGAGGAAGTCACGTGCTGT
LOC_Os01g15860
Os.10271.2.S1_x_at--606--7311Chr01:8930644..8930668 (25 bp)
GTGCTGTTCTCACCATGGCAAGAAA
LOC_Os01g15860
Os.10271.2.S1_x_at--273--9872Chr01:8930681..8930705 (25 bp)
TACACCTGAACTCTGGCTTGCAGCA
LOC_Os01g15860
Os.10271.2.S1_x_at--576--5411Chr01:8930739..8930763 (25 bp)
GAAGCTGATGCTTTACTAGCCAAGG
LOC_Os01g15860
Os.10271.2.S1_x_at--601--9051Chr01:8930767..8930791 (25 bp)
TGCAGGAGTGCCCAACAAGTGGTAT
LOC_Os01g15860
Os.10271.2.S1_x_at--683--2871Chr01:8930783..8930807 (25 bp)
AAGTGGTATCTTGTGGGCTGCAGCT
LOC_Os01g15860
Os.10271.2.S1_x_at--571--10172Chr01:8930807..8930831 (25 bp)
TATAGAGATGGTGCCACGTCCCCAA
LOC_Os01g15860
Os.10271.2.S1_x_at--624--2372Chr01:8930859..8930883 (25 bp)
AAACGATGTGACCATGATCCCCATG
LOC_Os01g15860
Os.10271.2.S1_x_at--536--6371Chr01:8930874..8930898 (25 bp)
GATCCCCATGTCATTGCAGCCGTGG
LOC_Os01g15860
Os.10271.2.S1_x_at--435--8792Chr01:8930957..8930981 (25 bp)
TGTTACTCTTGCTCCAGACATTGGA
LOC_Os01g15860
Os.10271.2.S1_x_at--229--1431Chr01:8931148..8931172 (25 bp)
AGAAAGCTGTGGTGGCTCTTGGCCA
LOC_Os01g15860
Target Sequence 
ATGGCTTGAGGAAGTCACGTGCTGTTCTCACCATGGCAAGAAAGAAGAACCCAGCTACACCTGAACTCTGGCTTGCAGCA
GTTCGAGCTGAATTGAGGCATAGGAACAAGAAGGAAGCTGATGCTTTACTAGCCAAGGCATTGCAGGAGTGCCCAACAAG
TGGTATCTTGTGGGCTGCAGCTATAGAGATGGTGCCACGTCCCCAACGTAAAGCAAAGAGCTCGGATGCTATAAAACGAT
GTGACCATGATCCCCATGTCATTGCAGCCGTGGCTAAACTTTTCTGGCATGATAGGAAGTTTGATAAAGCTAGGAGTTGG
TTGAACAGAGCTGTTACTCTTGCTCCAGACATTGGAGATTTTTGGGCCTTGTACTACAAATTCGAACTACAACATGGAAA
CGCTGATACACATAAGGATGTTGTACAACGATGTGTTGCATCAGAACCAAAGCATGGAGAGAGATGGCAAGCAATAGCGA
AGGCTGTTGAGAACTCACACCTGTCGATTGAGGCCCTTCTGAAGAAAGCTGTGGTGGCTCTTGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10271.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis