Browse Element(s) Details


Os.10274.1.S1_a_at

Description gb:AK111675.1
DB_XREF= gi:37988338
TID=Os.10274.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10274 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155F11, full insert sequence.
FL= gb:AK111675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0397010/11CIPK-like protein 1, putative, expressed
LOC_Os12g0381010/11CIPK-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03940OsAffx.19542.3.S1_x_at7/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03940OsAffx.7477.1.S1_at3/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03940OsAffx.9949.1.S1_at1/1111+1571289..1583920retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03950Os.47463.1.S1_x_at6/1111+1588877..1591084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03950Os.14491.2.S1_x_at4/1111+1588877..1591084transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03960OsAffx.13097.1.S1_s_at11/1111+1591314..1599431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03960Os.27037.1.A1_at1/1111+1591314..1599431transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g03970Os.10274.4.S1_at11/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03970Os.10274.1.S1_a_at10/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03970OsAffx.31568.1.S1_at5/1111+1602697..1608151CIPK-like protein 1, putative, expressed
LOC_Os11g03980OsAffx.31569.1.S1_x_at4/1111+1608336..1609068Calmodulin-6, putative
LOC_Os11g03990Os.49735.2.S1_at10/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g03990Os.49735.1.S1_x_at8/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g03990OsAffx.31569.1.S1_x_at1/1111+1609889..1614243Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os11g04000NANA11+1614764..1616642expressed protein
LOC_Os11g04010Os.7189.1.S1_at10/1111+1615991..1617301latex-abundant protein, putative, expressed
LOC_Os11g04020Os.18707.1.S1_at10/1111+1617495..1622979major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04030Os.6142.1.S1_s_at11/1111+1625486..1630412major facilitator superfamily antiporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0009628biological_processresponse to abiotic stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009845biological_processseed germination
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10274.1.S1_a_at--672--10792Chr12:1558337..1558361 (25 bp)
TTGTCCGCAAGATTGAGGAAGCCGC
LOC_Os12g03810
Os.10274.1.S1_a_at--1006--8172Chr12:1558353..1558377 (25 bp)
GGAAGCCGCAAAACCTCTAGGATTT
LOC_Os12g03810
Os.10274.1.S1_a_at--125--8911NONE
TGAGATACTGCAGGTTGCACCCTCT
NONE
Os.10274.1.S1_a_at--264--7912Chr12:1558676..1558700 (25 bp)
GGTTGCACCCTCTCTTCATATGGTT
LOC_Os12g03810
Os.10274.1.S1_a_at--407--1452Chr12:1558712..1558736 (25 bp)
AGCAAAAGGCGACACCCTCGAATTT
LOC_Os12g03810
Os.10274.1.S1_a_at--937--3232Chr12:1558921..1558945 (25 bp)
CAAGAACCTCTCCAGAACCTTAAAG
LOC_Os12g03810
Os.10274.1.S1_a_at--983--5472Chr12:1559017..1559041 (25 bp)
GAACTATTTTAGCATCCCATTCTTT
LOC_Os12g03810
Os.10274.1.S1_a_at--1009--3072Chr12:1559044..1559068 (25 bp)
AATCAGCATTCCCATTTCTAGAGGC
LOC_Os12g03810
Os.10274.1.S1_a_at--473--732Chr12:1559129..1559153 (25 bp)
ATGTTTGGTCTCCACTAGTGTTGTA
LOC_Os12g03810
Os.10274.1.S1_a_at--151--7052Chr12:1559151..1559175 (25 bp)
GTAAATGCTGCTCTTATTTGTCAGA
LOC_Os12g03810
Os.10274.1.S1_a_at--711--7112Chr12:1559170..1559194 (25 bp)
GTCAGAGAACCCTTGTGATAGCTCA
LOC_Os12g03810
Target Sequence 
TTGTCCGCAAGATTGAGGAAGCCGCAAAACCTCTAGGATTTGATGTTCAGAAGAAAAATTNCAAGTTAAGGNTNGAAAAN
GTAAAAGCAGGGAGAAAAGGAAATCTCAATGTTGCTANTGAGATACTGCAGGTTGCACCCTCTCTTCATATGGTTGAAGT
ACGAAAAGCAAAAGGCGACACCCTCGAATTTCATAAGTTCTACAAGAACCTCTCCAGAACCTTAAAGGATGTTGTTTGGA
AATCAGATGATCTTCAAAATCAACTTTCCTAGAGTAACTTGGGAGAGGAGGAATGGGTGAACTATTTTAGCATCCCATTC
TTTTGAATCAGCATTCCCATTTCTAGAGGCTGGAAAAGCAGAAAGCATGTTCATTGCATCTGTAATTAGATGTGANTGGC
CCTGTAAACTATGTTTGGTCTCCACTAGTGTTGTAAATGCTGCTCTTATTTGTCAGAGAACCCTTGTGATAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10274.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis