Browse Element(s) Details


Os.10274.3.S1_at

Description gb:AK111834.1
DB_XREF= gi:37988497
TID=Os.10274.3
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10274 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133G18, full insert sequence.
FL= gb:AK111834.1 gb:AK119956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0381611/11Calmodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03770Os.45976.1.S1_x_at4/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770Os.45976.1.S1_at3/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03770OsAffx.12206.1.S1_at1/1112+1532970..1537917transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g03780OsAffx.19474.1.S1_at8/1112+1539860..1540159hypothetical protein
LOC_Os12g03790OsAffx.7477.1.S1_at11/1112+1540850..1545542LG27/30-like gene, putative, expressed
LOC_Os12g03800NANA12+1549317..1550245expressed protein
LOC_Os12g03810Os.10274.4.S1_at11/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03810OsAffx.31568.1.S1_at11/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03810Os.10274.1.S1_a_at10/1112+1553896..1559308CIPK-like protein 1, putative, expressed
LOC_Os12g03816Os.10274.3.S1_at11/1112+1558859..1560568Calmodulin, putative, expressed
LOC_Os12g03816OsAffx.31569.1.S1_x_at8/1112+1558859..1560568Calmodulin, putative, expressed
LOC_Os12g03822Os.49735.1.S1_x_at11/1112+1561209..1562743Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os12g03822OsAffx.31569.1.S1_x_at2/1112+1561209..1562743Glutamate-rich WD repeat-containing protein 1, putative, expressed
LOC_Os12g03830Os.18707.1.S1_at1/1112+1567001..1571324major facilitator superfamily antiporter, putative
LOC_Os12g03840NANA12+1572521..1573733retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03850NANA12+1574190..1576956retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g03860Os.21635.1.S1_at10/1112+1583176..1588111major facilitator superfamily antiporter, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009612biological_processresponse to mechanical stimulus
GO:0019722biological_processcalcium-mediated signaling
GO:0030163biological_processprotein catabolism
GO:0004871molecular_functionsignal transducer activity
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10274.3.S1_at--643--1012Chr12:1559403..1559427 (25 bp)
AGGTTTCAGGTTTGCAACTGTTCTG
LOC_Os12g03816
Os.10274.3.S1_at--172--3131Chr12:1559338..1559362 (25 bp)
AATTTCTGGTTACACTTGTTCTGGG
LOC_Os12g03816
Os.10274.3.S1_at--173--2432Chr12:1559197..1559221 (25 bp)
AAAACCCATTGAGTGATCAGCTTCA
LOC_Os12g03816
Os.10274.3.S1_at--957--6433Chr12:12457787..12457809 (23 bp)
GATCAGCTTCACTTGAGCTATCACA
NONE
Os.10274.3.S1_at--747--5932Chr12:1559139..1559163 (25 bp)
GAGCAGCATTTACAACACTAGTGGA
LOC_Os12g03816
Os.10274.3.S1_at--206--2352Chr12:1559110..1559134 (25 bp)
AAACATAGTTTACAGGGCCACTCAC
LOC_Os12g03816
Os.10274.3.S1_at--1072--1072Chr12:1559097..1559121 (25 bp)
AGGGCCACTCACATCTAATTACAGA
LOC_Os12g03816
Os.10274.3.S1_at--780--671Chr12:1559068..1559092 (25 bp)
ATGAACATGCTTTCTGCTTTTCCAG
LOC_Os12g03816
Os.10274.3.S1_at--206--3712Chr12:1559005..1559029 (25 bp)
GCTAAAATAGTTCACCCATTCCTCC
LOC_Os12g03816
Os.10274.3.S1_at--937--9235Chr03:11388388..11388408 (21 bp)
TCCTCTCCCAAGTTACTCTAGGAAA
NONE
Os.10274.3.S1_at--20--6552Chr12:1558866..1558890 (25 bp)
GATTCAGTACAAGCCATTCAACCAA
LOC_Os12g03816
Target Sequence 
AGGTTTCAGGTTTGCAACTGTTCTGATGAGGATTGTATAGTTCAGAGTTTTTTTTTTGTCACCTCAATTTCTGGTTACAC
TTGTTCTGGGGCTATGCAAACAAGAAAATCAAACAACTACACAGTGTAAATGAAAATGAATAATGCTGGCCAATTAATAT
ACTTGTTCCTCANAANANNNNGATTTACATACAAAACTTGACACACAAAACCCATTGAGTGATCAGCTTCACTTGAGCTA
TCACAAGGGTTCTCTGACAAATAAGAGCAGCATTTACAACACTAGTGGAGACCAAACATAGTTTACAGGGCCACTCACAT
CTAATTACAGATGCAATGAACATGCTTTCTGCTTTTCCAGCCTCTAGAAATGGGAATGCTGATTCAAAAGAATGGGATGC
TAAAATAGTTCACCCATTCCTCCTCTCCCAAGTTACTCTAGGAAAGTTGATTTTGAAGATCATCTGATTTCCAAACAACA
TCCTTTAAGGTTCTGGAGAGGTTCTTGTAGAACTGCAACACATTACAAGTTTGAAGTGATTCAGTACAAGCCATTCAACC
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10274.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis