Browse Element(s) Details


Os.10276.2.S1_at

Description gb:CR289379
DB_XREF= gi:44675945
DB_XREF=CR289379
CLONE=p754d09p5
TID=Os.10276.2
CNT=24
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ADP-ribosylation factor 1 (OJ1118_B03.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1217010/11ADP-ribosylation factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12140Os.32977.1.S1_x_at11/117+6789113..6794916DNA-binding protein, putative, expressed
LOC_Os07g12140OsAffx.32241.1.A1_at2/117+6789113..6794916DNA-binding protein, putative, expressed
LOC_Os07g12150Os.14385.1.S1_at11/117+6797286..6798153Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os07g12160Os.40210.1.S1_at10/117+6801713..68048772-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein, expressed
LOC_Os07g12170Os.10276.2.S1_at10/117+6807581..6810987ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12170Os.12389.1.S1_x_at1/117+6807581..6810987ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12180OsAffx.22708.5.S1_x_at7/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.1.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.2.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.5.S1_at3/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.3.S1_x_at9/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.4.S1_x_at8/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12200Os.10276.1.S1_at11/117+6821013..6823997ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12210OsAffx.22440.1.S1_at11/117+6832221..6833291hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0005798cellular_componentGolgi-associated vesicle
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10276.2.S1_at--1023--8851Chr07:6810405..6810429 (25 bp)
TGAGGCTTGGAACTCCGACCGTAAA
LOC_Os07g12170
Os.10276.2.S1_at--101--5831Chr07:6810421..6810445 (25 bp)
GACCGTAAAACTTCGAGCTGACTAG
LOC_Os07g12170
Os.10276.2.S1_at--843--8771Chr07:6810496..6810520 (25 bp)
TGTTAGGTGTCTTCGGCAAGCCCAA
LOC_Os07g12170
Os.10276.2.S1_at--568--4371Chr07:6810579..6810603 (25 bp)
CCAACCTGTGGTCGTTTTGCACAAG
LOC_Os07g12170
Os.10276.2.S1_at--761--10211Chr07:6810606..6810630 (25 bp)
TTTGCAGTATGATGTTCCCGTGGGC
LOC_Os07g12170
Os.10276.2.S1_at--525--671Chr07:6810639..6810663 (25 bp)
ATGAACCTGTCCAATACCTTACTAC
LOC_Os07g12170
Os.10276.2.S1_at--1029--2011Chr07:6810659..6810683 (25 bp)
ACTACACATTCTACCAGCTTTTTGC
LOC_Os07g12170
Os.10276.2.S1_at--317--9751NONE
TAATACCGTACTGCATTCTCTGGAT
NONE
Os.10276.2.S1_at--734--3871Chr07:6810824..6810848 (25 bp)
CTGTGTGCCTGAGACATGGTGCTGA
LOC_Os07g12170
Os.10276.2.S1_at--570--5271Chr07:6810905..6810929 (25 bp)
GAATGATGAGCGTGTGTTCCCGTGA
LOC_Os07g12170
Os.10276.2.S1_at--730--10651Chr07:6810921..6810945 (25 bp)
TTCCCGTGAGGATCTTTGCATGTAA
LOC_Os07g12170
Target Sequence 
TGAGGCTTGGAACTCCGACCGTAAAACTTCGAGCTGACTAGGAGCTATGCATGTATCTCATTCATACGTAGGACGAANCA
CTGTTTCAATCTTGTTAGGTGTCTTCGGCAAGCCCAATATTTTTGTAATGATACCTCACTCCANCGTTATCTTCTCCGTA
TTATTTGTACCTACCCCAACCTGTGGTCGTTTTGCACAAGGATTTGCAGTATGATGTTCCCGTGGGCATGTTGTGATGAA
CCTGTCCAATACCTTACTACACATTCTACCAGCTTTTTGCTACAAAACATATATTGCTGCTCATANNATTTGATGAATGC
CTCATGTTTAGCAGTTCAATTCNTTCCTAATACCGTACTGCATTCTCTGGATCCTGGAATCGACGAAAACAGTTGTTCTG
TTTCTCTTTTGTGGCCTTTGTCTGTGTGCCTGAGACATGGTGCTGAGGACTATGCATGCGTATGCTTATACAAGCATTAG
TCATTTTTTTTTGGTTATCTTAGAATGATGAGCGTGTGTTCCCGTGAGGATCTTTGCATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10276.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis