Browse Element(s) Details


Os.10295.1.S1_at

Description gb:AK058272.1
DB_XREF= gi:32968290
TID=Os.10295.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B09, full insert sequence.
FL= gb:AK058272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g073005/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07250OsAffx.31630.1.S1_at11/1112+3564998..3565556hypothetical protein
LOC_Os12g07260Os.16889.1.S1_a_at11/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_x_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07270Os.53475.1.A1_at10/1112+3572432..3575996Sodium Bile acid symporter family protein, expressed
LOC_Os12g07280Os.50556.1.S1_at11/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07280OsAffx.13726.1.S1_x_at2/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07290Os.27585.1.S1_at11/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07290OsAffx.27834.1.S1_at1/1112+3582443..3586381Alpha4-fucosyltransferase, putative, expressed
LOC_Os12g07300Os.10295.1.S1_at5/1112+3590141..3596478expressed protein
LOC_Os12g07310Os.17271.1.S1_at10/1112+3601557..3604026Citrate binding protein precursor, putative, expressed
LOC_Os12g07319NANA12+3606230..3606421NA
LOC_Os12g07328NANA12+3608576..3608863NA
LOC_Os12g07340OsAffx.19528.1.S1_at10/1112+3610357..3612148hypothetical protein
LOC_Os12g07350OsAffx.7511.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07350Os.55062.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10295.1.S1_at--610--2391Chr12:3596211..3596235 (25 bp)
AAACAAGTTGACCTCGGTGGCTCGT
LOC_Os12g07300
Os.10295.1.S1_at--927--5831Chr12:3596219..3596243 (25 bp)
TGACCTCGGTGGCTCGTAAAACTTA
LOC_Os12g07300
Os.10295.1.S1_at--351--951Chr12:3596269..3596293 (25 bp)
AGGAAGCCCTGCTAACACAAAGCCT
LOC_Os12g07300
Os.10295.1.S1_at--1145--2651Chr12:3596288..3596312 (25 bp)
AAGCCTCGAAAACGTGTTCATCTCA
LOC_Os12g07300
Os.10295.1.S1_at--457--5511Chr12:3596454..3596478 (25 bp)
GAAAATTGCAGCTTACTTGTTTGCT
LOC_Os12g07300
Os.10295.1.S1_at--518--8671NONE
TGTGGGAAATCCTTGCTACATATAG
NONE
Os.10295.1.S1_at--637--10351Chr12:3596510..3596534 (25 bp)
TTTATTCCTATATTGCTTGCGCTTT
NONE
Os.10295.1.S1_at--711--7791NONE
GGTCCAGTGGGCATTTATCCTTAAG
NONE
Os.10295.1.S1_at--394--5591NONE
GAAATGCCCTGGTTCGTTATTGTAA
NONE
Os.10295.1.S1_at--28--5471NONE
GAACGGCCGTGTGCGATACAATCAT
NONE
Os.10295.1.S1_at--661--3211NONE
CAAGGTTAATTGTCTGTTGCTAGAT
NONE
Target Sequence 
AAACAAGTTGACCTCGGTGGCTCGTAAAACTTACCAGAAAAACTCCCTNTGCATNCTGAGGAAGCCCTGCTAACACAAAG
CCTCGAAAACGTGTTCATCTCACNAGGGGGGCTCAAAGGAGCAGACAAGTTCTCCAGAAAACATCTGGCACCAGCAGCCA
TCAATTTTGATGTTTCAATTTCTTAGAATNTTACTATAGTTTTGCTGTATCNTCACTGTAGCACAGTTAATTTTGTTATG
GAAGAAAATTGCAGCTTACTTGTTTGCTNAGTGTGGGAAATCCTTGCTACATATAGGATTTTATTCCTATATTGCTTGCG
CTTTTTGGGGTCCAGTGGGCATTTATCCTTAAGAAATGCCCTGGTTCGTTATTGTAAGAGTTTCAAACGACCAAAGAACG
GCCGTGTGCGATACAATCATACAACATGGTGATGGTGTGTGTGTGTGTTTTTTTTTAATTTATAAATGCAAGGTTAATTG
TCTGTTGCTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis