Browse Element(s) Details


Os.10300.1.S1_x_at

Description gb:AU096466
DB_XREF= gi:8859148
DB_XREF=AU096466
CLONE=S13774
TID=Os.10300.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0482C06.16 (P0482C06.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0184011/11Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g064801/11SCO1/SenC family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01800Os.17349.1.S1_s_at11/111+419329..428236expressed protein
LOC_Os01g01800Os.20415.1.S1_at10/111+419329..428236expressed protein
LOC_Os01g01810OsAffx.10645.1.S1_at3/111+429237..429554hypothetical protein
LOC_Os01g01820OsAffx.10825.1.S1_s_at11/111+433097..437330hypothetical protein
LOC_Os01g01820OsAffx.10825.2.S1_at11/111+433097..437330hypothetical protein
LOC_Os01g01830Os.15541.2.S1_x_at11/111+438130..444133Prolyl endopeptidase, putative, expressed
LOC_Os01g01840Os.10300.1.S1_x_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.10300.1.S1_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_x_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.27662.1.S1_at1/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01850NANA1+463082..469237transposon protein, putative, unclassified
LOC_Os01g01860NANA1+469876..473112transposon protein, putative, unclassified
LOC_Os01g01870Os.30044.1.S1_a_at11/111+475180..477967Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01880Os.57330.1.S1_at11/111+479134..479757expressed protein
LOC_Os01g01890Os.9464.1.A1_at11/111+480689..483294expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10300.1.S1_x_at--483--2311Chr01:453548..453572 (25 bp)
AAAGGGTGGACGAGCTGCACCACAA
LOC_Os01g01840
Os.10300.1.S1_x_at--1147--691Chr01:453583..453607 (25 bp)
ATGAGTATCACATCATCGCGCTGCC
LOC_Os01g01840
Os.10300.1.S1_x_at--451--9351Chr01:453751..453775 (25 bp)
TCGCTGATCAGCTTGGACGTGGTGC
LOC_Os01g01840
Os.10300.1.S1_x_at--407--1631Chr01:453789..453813 (25 bp)
AGCGAGGCCGGTCAAGTTCCACGAC
LOC_Os01g01840
Os.10300.1.S1_x_at--402--4012Chr01:453813..453837 (25 bp)
CGTCATCACCGTCCTCGAGGAAGAA
LOC_Os01g01840
Os.10300.1.S1_x_at--450--2231Chr01:453878..453902 (25 bp)
ACAATTTCTACTACACCATCTACTC
LOC_Os01g01840
Os.10300.1.S1_x_at--704--1991Chr01:453899..454096 (25 bp)
ACTCCAGGGCCTTTAGCTCAAGAAT
LOC_Os01g01840
Os.10300.1.S1_x_at--776--8291Chr01:454106..454130 (25 bp)
GGCTTCGAGGATTTCTGAGAGACTA
LOC_Os01g01840
Os.10300.1.S1_x_at--365--5711Chr01:454126..454150 (25 bp)
GACTACGGGCATTGGTATGACACCT
LOC_Os01g01840
Os.10300.1.S1_x_at--956--3851Chr01:454149..454173 (25 bp)
CTGAGGTACCAGATCATAACTGTAT
LOC_Os01g01840
Os.10300.1.S1_x_at--349--7151Chr01:454180..454204 (25 bp)
GTCTTCTACACATATATCATTCCAT
LOC_Os01g01840
Target Sequence 
AAAGGGTGGACGAGCTGCACCACAAGAGGAGCATGATGAGTATCACATCATCGCGCTGCCGCTCAGGAGGAGGAGGAGGA
CCAGCTGCTGCTGCTGGCCAGTCGNCGNGCGGCGGCGGCGGCGGGGAAGAAGAAGAAGAAGATATGACGAGGACGACGGC
NGCGGCGNCGGTGGTGGAGGTGCGGCAGCACNTGCAGGAGGGGTCGCTGATCAGCTTGGACGTGGTGCTGATCTGCAGCG
CAGCGAGGCCGGTCAAGTTCCACGACGTCATCACCGTCCTCGAGGAAGAAGGCGCCGACNTCATCTCCGCCAACTTCTCC
CTCGCCGCCCACAATTTCTACTACACCATCTACTCCAGGGCCTTTAGCTCAAGAATTGGCATAGNGGCTTCGAGGATTTC
TGAGAGACTACGGGCATTGGTATGACACCTGAGGTACCAGATCATAACTGTATATATATGTCTTCTACACATATATCATT
CCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10300.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis