Browse Element(s) Details


Os.10333.1.S1_at

Description gb:AK070421.1
DB_XREF= gi:32980445
TID=Os.10333.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.10333 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU055771(S20046),AU081017(S20466),AU055772(S20046)~similar to cytoskeletal protein (P0022B05.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048M12, full insert sequence.
FL= gb:AK070421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0280011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02780Os.34851.1.S1_at11/117+1013653..1019896protein kinase family protein, putative, expressed
LOC_Os07g02790Os.5591.1.S1_at11/117+1022177..1024721expressed protein
LOC_Os07g02800Os.10333.1.S1_at11/117+1044316..1046349myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os07g02810Os.7637.1.S1_at11/117+1053441..1056428L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os07g02820OsAffx.28240.1.S1_at11/117+1059647..1060707expressed protein
LOC_Os07g02840NANA7+1062506..1064009hypothetical protein
LOC_Os07g02850Os.46022.1.S1_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.46022.1.S1_x_at11/117+1065317..1066167expressed protein
LOC_Os07g02850Os.23172.1.S1_x_at4/117+1065317..1066167expressed protein
LOC_Os07g02850Os.40003.1.S1_x_at1/117+1065317..1066167expressed protein
LOC_Os07g02860OsAffx.28241.1.S1_at11/117+1067613..1069134hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10333.1.S1_at--204--9571Chr07:1045743..1045763 (21 bp)
TCTTCAGAAGTACCGCCTGCACAAC
LOC_Os07g02800
Os.10333.1.S1_at--264--2631Chr07:1045761..1045785 (25 bp)
AACCGGCCGAGAGTGCCAAGCTCAA
LOC_Os07g02800
Os.10333.1.S1_at--427--3171Chr07:1045787..1045811 (25 bp)
AATTGTGAACCAACCGATTGTGCTC
LOC_Os07g02800
Os.10333.1.S1_at--219--6611Chr07:1045802..1045826 (25 bp)
GATTGTGCTCATGCAAGGGCTCTGT
LOC_Os07g02800
Os.10333.1.S1_at--1063--2871Chr07:1045816..1045840 (25 bp)
AAGGGCTCTGTTACATTCCTCAAGA
LOC_Os07g02800
Os.10333.1.S1_at--1004--1351Chr07:1045838..1045862 (25 bp)
AGAGCAAAGCAGCTCCCAGTCTGGA
LOC_Os07g02800
Os.10333.1.S1_at--53--10391Chr07:1046004..1046028 (25 bp)
TTTTCATCACAGCTTTGGTGGGTTA
LOC_Os07g02800
Os.10333.1.S1_at--433--71Chr07:1046058..1046082 (25 bp)
ATACCAGATCTTCAGGGAGGAGTTT
LOC_Os07g02800
Os.10333.1.S1_at--865--3711Chr07:1046193..1046217 (25 bp)
CTAGCTACAGTTTTGCGGCGAGTTT
LOC_Os07g02800
Os.10333.1.S1_at--3--7891Chr07:1046229..1046253 (25 bp)
GGATTCGGGCAGAGCTACAGTTTTC
LOC_Os07g02800
Os.10333.1.S1_at--704--1571Chr07:1046241..1046265 (25 bp)
AGCTACAGTTTTCGCCCTGAGAATT
LOC_Os07g02800
Target Sequence 
TCTTCAGAAGTACCGCCTGCACAACCGGCCGAGAGTGCCAAGCTCAACAATTGTGAACCAACCGATTGTGCTCATGCAAG
GGCTCTGTTACATTCCTCAAGAGCAAAGCAGCTCCCAGTCTGGATCCCCTGAGGGTCCTCTCCATTTCTCAGGCTCAGGC
ATGGCCGGTGGCGGCTCATCGGCGGCGACGGTCAGCTGCGAGGAGGAGGATGGCAGGTCTGAGAGCTATGGCTGGAAATG
ATCCAAGATGATGTTGCATCAGAAATTTTCATCACAGCTTTGGTGGGTTAGGTTAATTGCGGCGCGGCGATGAAAAATAA
TACCAGATCTTCAGGGAGGAGTTTGAGAGGAGAGACTAGTGTAGGTGTTTGTATACAGTGAGATCGANCCTTGAGTGCTT
GAGATGAAACTGATGGTGAGTTGGTTGTTGTCATGTATATCGAAAGAGATGATACTAGCTACAGTTTTGCGGCGAGTTTT
GCCGGTTAAAGGATTCGGGCAGAGCTACAGTTTTCGCCCTGAGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10333.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis