Browse Element(s) Details


Os.10352.1.S1_at

Description gb:AK121285.1
DB_XREF= gi:37990908
TID=Os.10352.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108O11, full insert sequence.
FL= gb:AK121285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g014709/11Methionine S-methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01410Os.28943.1.S1_x_at4/115+218685..221218retrotransposon protein, putative, unclassified
LOC_Os05g01420OsAffx.21100.1.S1_at3/115+223134..226207retrotransposon protein, putative, unclassified
LOC_Os05g01430OsAffx.26677.1.S1_x_at3/115+226442..227461Leucine Rich Repeat family protein
LOC_Os05g01440NANA5+229512..234632phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed
LOC_Os05g01444OsAffx.26677.1.S1_x_at11/115+234821..236460Leucine Rich Repeat family protein, expressed
LOC_Os05g01444Os.55730.1.S1_at11/115+234821..236460Leucine Rich Repeat family protein, expressed
LOC_Os05g01450Os.11420.1.S1_at11/115+238114..240333Eukaryotic translation initiation factor 3 subunit 5, putative, expressed
LOC_Os05g01460Os.7299.1.S1_at11/115+241786..244487TPR Domain containing protein, expressed
LOC_Os05g01470Os.10352.1.S1_at9/115+245976..256074Methionine S-methyltransferase, putative, expressed
LOC_Os05g01480Os.12383.1.S1_at11/115+263024..265567Ras-related protein Rab11C, putative, expressed
LOC_Os05g01490Os.36864.1.A1_at3/115+265404..268749GTP-binding protein YPTM1, putative, expressed
LOC_Os05g01500OsAffx.14490.1.S1_at11/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01500Os.18560.1.S1_at10/115+269467..275203CAP-Gly domain containing protein, expressed
LOC_Os05g01510OsAffx.26678.1.S1_at9/115+279532..281914cytoplasmic membrane protein, putative
LOC_Os05g01510Os.12600.1.S1_at7/115+279532..281914cytoplasmic membrane protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0046500biological_processS-adenosylmethionine metabolism
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10352.1.S1_at--832--9731Chr05:246399..246423 (25 bp)
TCAAGGAAGCCATTCTCAGGTCCAC
LOC_Os05g01470
Os.10352.1.S1_at--468--3471Chr05:246383..246407 (25 bp)
CAGGTCCACCGGGTTGTGCATAAAC
LOC_Os05g01470
Os.10352.1.S1_at--301--3091Chr05:246341..246365 (25 bp)
AATACCGGATCACTGTCGGTTCAGC
LOC_Os05g01470
Os.10352.1.S1_at--1003--9431Chr05:246326..246350 (25 bp)
TCGGTTCAGCTTTGCTCTGGAGAGC
LOC_Os05g01470
Os.10352.1.S1_at--1056--3191Chr05:246285..246309 (25 bp)
CAATGGGCTGCATAGTTCGCTTCAA
LOC_Os05g01470
Os.10352.1.S1_at--749--2731Chr05:246245..246269 (25 bp)
AAGCAAGGCTTTTCATCAGATCAAT
LOC_Os05g01470
Os.10352.1.S1_at--1129--9831Chr05:246214..246238 (25 bp)
TAAATGAAATTTCCCATCGTCGTGG
LOC_Os05g01470
Os.10352.1.S1_at--1039--10191Chr05:246150..246174 (25 bp)
TATTATCCATTGTTAGCCTGTCCTG
LOC_Os05g01470
Os.10352.1.S1_at--498--5451Chr05:246033..246057 (25 bp)
GAACGACGTATTGGCATGGCATATT
LOC_Os05g01470
Os.10352.1.S1_at--538--1871Chr05:245962..245986 (25 bp)
ACGTTTCATCCATATTTATCCCTAC
NONE
Os.10352.1.S1_at--265--551Chr05:245945..245969 (25 bp)
ATCCCTACTCGTTAAGATGGCACCA
NONE
Target Sequence 
TCAAGGAAGCCATTCTCAGGTCCACCGGGTTGTGCATAAACAGCAGCTCATGGACAGGAATACCGGATCACTGTCGGTTC
AGCTTTGCTCTGGAGAGCAGCGAATTCGAGCGTGCAATGGGCTGCATAGTTCGCTTCAAGGAGTTGGTTCTTGGAAGCAA
GGCTTTTCATCAGATCAATGGTAACTAAATGAAATTTCCCATCGTCGTGGAAACTGAATCCTGAAGAAATGTAGCCACTA
CATACATATTATTATCCATTGTTAGCCTGTCCTGTTCGGGGCTGATTGAACATTTTTGTGCTTAGAAAAAGAATAATGAG
CACAGGAAGGCTGGTATGAATGTAGTAGCAAACTGGAATTAAGTCTGAACGACGTATTGGCATGGCATATTTCTCCAGAA
GATGATGCTTCTTTTATTTTNTGCTATCTTTATGCTTACGTTTCATCCATATTTATCCCTACTCGTTAAGATGGCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10352.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis