Browse Element(s) Details


Os.10353.1.S1_at

Description gb:AK072657.1
DB_XREF= gi:32982680
TID=Os.10353.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 2, T20B5.1 (P0028E10.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134M09, full insert sequence.
FL= gb:AK072657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0740011/11SVP1-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07370Os.37822.3.A1_s_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07370Os.37822.1.A1_a_at11/111+3476198..3481381CENP-E like kinetochore protein, putative, expressed
LOC_Os01g07376Os.16494.1.S1_at11/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_x_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07376OsAffx.11853.1.S1_at9/111+3486150..3488793Thioredoxin H-type, putative, expressed
LOC_Os01g07382Os.38232.1.S1_at11/111+3490123..3493361expressed protein
LOC_Os01g07390Os.46325.1.A1_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07390OsAffx.10539.1.S1_x_at11/111+3497896..3501595Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g07400Os.10353.1.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07400Os.10353.2.S1_at11/111+3502478..3507222SVP1-like protein 2, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_x_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410OsAffx.22754.1.S1_s_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07410Os.17118.1.A1_at11/111+3508637..3512703Axi 1 protein, putative, expressed
LOC_Os01g07420Os.1678.1.S1_at10/111+3513526..3515887hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g07430OsAffx.23147.1.S1_at11/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07430Os.57514.1.S1_x_at1/111+3517580..3518778Myb-like DNA-binding domain containing protein
LOC_Os01g07439NANA1+3525868..3526633NA
LOC_Os01g07450OsAffx.19945.1.S1_at11/111+3529661..3530551Myb-like DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
GO:0010149biological_processsenescence (sensu Magnoliophyta)
GO:0042594biological_processresponse to starvation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10353.1.S1_at--443--4171Chr01:3506826..3506850 (25 bp)
CCCCTGAACTGCGTGACGAAATCAT
LOC_Os01g07400
Os.10353.1.S1_at--152--2911Chr01:3506876..3506900 (25 bp)
AAGGTTGTGCTCAGTCCATTGTATA
LOC_Os01g07400
Os.10353.1.S1_at--1160--10791Chr01:3506894..3506918 (25 bp)
TTGTATATAAATGCCGTCCTCTCGC
LOC_Os01g07400
Os.10353.1.S1_at--697--3751Chr01:3506912..3506936 (25 bp)
CTCTCGCCGGCAAAGTTCTAGGTAG
LOC_Os01g07400
Os.10353.1.S1_at--965--3031Chr01:3506941..3506965 (25 bp)
AATAAGGAGAGCTGGGTGTTCGATC
LOC_Os01g07400
Os.10353.1.S1_at--1134--9211Chr01:3506976..3507000 (25 bp)
TCCACCCTCATTCTGAAGCATTTGT
LOC_Os01g07400
Os.10353.1.S1_at--1059--4191Chr01:3507003..3507027 (25 bp)
CCCCGTCGAAATTGCAGCTAGTTGA
LOC_Os01g07400
Os.10353.1.S1_at--559--6811Chr01:3507033..3507057 (25 bp)
GTTTTCTTTCCTTTCGATGAACACA
LOC_Os01g07400
Os.10353.1.S1_at--859--6311Chr01:3507048..3507072 (25 bp)
GATGAACACAACTTTTCACTGATAT
LOC_Os01g07400
Os.10353.1.S1_at--1083--31Chr01:3507121..3507145 (25 bp)
ATTGTAGTTCTACTTCTGCAAGGCC
LOC_Os01g07400
Os.10353.1.S1_at--289--7471Chr01:3507173..3507197 (25 bp)
GTGTGATACTGCTTCATCTCAAAAT
LOC_Os01g07400
Target Sequence 
CCCCTGAACTGCGTGACGAAATCATATCACCTTGATAACTTGTNTATATAAAGGTTGTGCTCAGTCCATTGTATATAAAT
GCCGTCCTCTCGCCGGCAAAGTTCTAGGTAGCCGGAATAAGGAGAGCTGGGTGTTCGATCGCAACCTACTTCCACCCTCA
TTCTGAAGCATTTGTCCCCCCGTCGAAATTGCAGCTAGTTGATTTTAGTTTTCTTTCCTTTCGATGAACACAACTTTTCA
CTGATATATATATATNNNNNNGACATAAAAGCTCAAGAATGAAATACAAATCTGAGCTTATATTGTAGTTCTACTTCTGC
AAGGCCNTATAGCAAGTCTCAGATCTGCATGTNGTGTGATACTGCTTCATCTCAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis